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The map label for this gene is ycgA [H]

Identifier: 52787130

GI number: 52787130

Start: 3283082

End: 3284488

Strand: Reverse

Name: ycgA [H]

Synonym: BLi03438

Alternate gene names: 52787130

Gene position: 3284488-3283082 (Counterclockwise)

Preceding gene: 52787134

Following gene: 52787129

Centisome position: 77.78

GC content: 50.6

Gene sequence:

>1407_bases
ATGGGAATGCCGGCTTACAAAACAGAAGAGGTGAAAAAGAACGAAAAACGCAAAAAGGAATTTCCGCATATTTATGTCAT
TCTGGCTGTCATGATTGGTCTTATGGCGCTTGCGACATATATCATTCCGGCAGGCGAATATGAACGGGTGGAAAGTCCGG
ACGGCAGGGAAATGATTGATCCAGCGTCCTACAAACGGGTCGAACAGACGCCGGTTGATATTCTTGGCTTGCTTACGGCG
GTTCCGAAAGGGATGACAGAAGCGGCTCCGATTATTGTGTTTACGTTTGTGATTGGCGGAGCTTTTGCCGTTCTGAGGAA
AGCATCTGTCATTGAGCTCGGCGTCCGTCTGTTGGCCGATCAGTTCAGGAACAAGCCTGTTTTCGTTACGCCTGTCTTAA
TATTCGTTTTCTCCGGCATTTCCTGTTTTATCGGGACGCCTGAGCTTTCGATCGTTTATGTCCCTGTCATTCTTCCTTTG
CTGCTGTCCCTCGGATATGACCGGATGACAGCAGCAGCAATCGCATTGTGCGGGACGATCGCCGGCTTTACGAGCGCTTT
GACAAACCCATTTACCGTGGGAACCTCACAAATGATTTCCGGTCTCCCGCTTTATTCCGGGATGGGGTACAGGGCGGTCA
TCTTTGTTGTCGTTACGGCGATTGCCGCTGTTTATGTGCTCAAATATGCGGAAAAGATCAGAGCGCATCCTGAAAAAAGC
CTGACGGGCAAGGAAGCAGTCGAACCCGTGCCGGCTTTTAAAGCAGGCGGACGGGTGAAATGGGCCGGGATCGCGGCGCT
TGGGTTGTTTGCCGGCTTGATTGGGTGTGTAATTTATTTCAGGTGGGATATGCTGACAATGGCGGGCTATTTCCTGGCGC
TCGGCATCATTCCTGCTTACATCGCCGGCATGAATTCGAGAGACATTGCCGAGTCCTTTAATGAGGGTTTTAAAGAAGTG
CTCGTCGGTGCGATGATTTGCGGCATTGCAAGAGCTGCAGCAGTCGTTATGGCCGACGGGCAGATCATGGATACGATTGT
TTACGGCTTGTCTCATGCTGTCTCACAGCTTCCTTCGTATTTAACGGTTACGGCGATGCTCTTTACACAGATGCTGTTTA
ACTTTTTTGTTCCAAGCGGAAGCGGACAGGCTTTAATAATGATGCCGATTATGGCGCCTTTGGCTGATATCGTCGGAATT
ACGCGGCAGACGGCGATTCTGGCCTTCCAATTCGGAGACGGTTTTTCAAACATCGTCTTTCCGACATCGGGATATTTTAT
GGCGACGCTTGCGATCAGCCGGATTGCCTGGAACAAATGGCTGCGATTCATCCTTCCGCTGTTTTGCCTCTGGATGGGAG
CGGCCGTGCTTTTCCTGATGTTTGCTAACGCTGTCGGCTGGTCGTAA

Upstream 100 bases:

>100_bases
CTGAAAACACGCTGAAATTTAGAGGATTTTTCAATGCTATCAGCGCTGCGATCATTTAATATGTTAAAAAATTTAACATG
GAAGAAGGGGAGATTAAAAA

Downstream 100 bases:

>100_bases
ATGGATAAAAAGGCGGGGGAATCTCCGCTTTTTTATTTACCCATCATTCCTTGAGAAGAAAAAATATGCAAAAATATGAA
AAAACTAGACTTTAAACCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MGMPAYKTEEVKKNEKRKKEFPHIYVILAVMIGLMALATYIIPAGEYERVESPDGREMIDPASYKRVEQTPVDILGLLTA
VPKGMTEAAPIIVFTFVIGGAFAVLRKASVIELGVRLLADQFRNKPVFVTPVLIFVFSGISCFIGTPELSIVYVPVILPL
LLSLGYDRMTAAAIALCGTIAGFTSALTNPFTVGTSQMISGLPLYSGMGYRAVIFVVVTAIAAVYVLKYAEKIRAHPEKS
LTGKEAVEPVPAFKAGGRVKWAGIAALGLFAGLIGCVIYFRWDMLTMAGYFLALGIIPAYIAGMNSRDIAESFNEGFKEV
LVGAMICGIARAAAVVMADGQIMDTIVYGLSHAVSQLPSYLTVTAMLFTQMLFNFFVPSGSGQALIMMPIMAPLADIVGI
TRQTAILAFQFGDGFSNIVFPTSGYFMATLAISRIAWNKWLRFILPLFCLWMGAAVLFLMFANAVGWS

Sequences:

>Translated_468_residues
MGMPAYKTEEVKKNEKRKKEFPHIYVILAVMIGLMALATYIIPAGEYERVESPDGREMIDPASYKRVEQTPVDILGLLTA
VPKGMTEAAPIIVFTFVIGGAFAVLRKASVIELGVRLLADQFRNKPVFVTPVLIFVFSGISCFIGTPELSIVYVPVILPL
LLSLGYDRMTAAAIALCGTIAGFTSALTNPFTVGTSQMISGLPLYSGMGYRAVIFVVVTAIAAVYVLKYAEKIRAHPEKS
LTGKEAVEPVPAFKAGGRVKWAGIAALGLFAGLIGCVIYFRWDMLTMAGYFLALGIIPAYIAGMNSRDIAESFNEGFKEV
LVGAMICGIARAAAVVMADGQIMDTIVYGLSHAVSQLPSYLTVTAMLFTQMLFNFFVPSGSGQALIMMPIMAPLADIVGI
TRQTAILAFQFGDGFSNIVFPTSGYFMATLAISRIAWNKWLRFILPLFCLWMGAAVLFLMFANAVGWS
>Mature_467_residues
GMPAYKTEEVKKNEKRKKEFPHIYVILAVMIGLMALATYIIPAGEYERVESPDGREMIDPASYKRVEQTPVDILGLLTAV
PKGMTEAAPIIVFTFVIGGAFAVLRKASVIELGVRLLADQFRNKPVFVTPVLIFVFSGISCFIGTPELSIVYVPVILPLL
LSLGYDRMTAAAIALCGTIAGFTSALTNPFTVGTSQMISGLPLYSGMGYRAVIFVVVTAIAAVYVLKYAEKIRAHPEKSL
TGKEAVEPVPAFKAGGRVKWAGIAALGLFAGLIGCVIYFRWDMLTMAGYFLALGIIPAYIAGMNSRDIAESFNEGFKEVL
VGAMICGIARAAAVVMADGQIMDTIVYGLSHAVSQLPSYLTVTAMLFTQMLFNFFVPSGSGQALIMMPIMAPLADIVGIT
RQTAILAFQFGDGFSNIVFPTSGYFMATLAISRIAWNKWLRFILPLFCLWMGAAVLFLMFANAVGWS

Specific function: Unknown

COG id: COG1288

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli yfcC and H.influenzae HI_0594 [H]

Homologues:

Organism=Escherichia coli, GI87082082, Length=498, Percent_Identity=31.9277108433735, Blast_Score=231, Evalue=6e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018387
- InterPro:   IPR018385 [H]

Pfam domain/function: PF03606 DcuC [H]

EC number: NA

Molecular weight: Translated: 50636; Mature: 50505

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGMPAYKTEEVKKNEKRKKEFPHIYVILAVMIGLMALATYIIPAGEYERVESPDGREMID
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PASYKRVEQTPVDILGLLTAVPKGMTEAAPIIVFTFVIGGAFAVLRKASVIELGVRLLAD
CHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QFRNKPVFVTPVLIFVFSGISCFIGTPELSIVYVPVILPLLLSLGYDRMTAAAIALCGTI
HHCCCCEEHHHHHHHHHCCCHHEECCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHH
AGFTSALTNPFTVGTSQMISGLPLYSGMGYRAVIFVVVTAIAAVYVLKYAEKIRAHPEKS
HHHHHHHCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LTGKEAVEPVPAFKAGGRVKWAGIAALGLFAGLIGCVIYFRWDMLTMAGYFLALGIIPAY
CCCHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAGMNSRDIAESFNEGFKEVLVGAMICGIARAAAVVMADGQIMDTIVYGLSHAVSQLPSY
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHH
LTVTAMLFTQMLFNFFVPSGSGQALIMMPIMAPLADIVGITRQTAILAFQFGDGFSNIVF
HHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCEE
PTSGYFMATLAISRIAWNKWLRFILPLFCLWMGAAVLFLMFANAVGWS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
GMPAYKTEEVKKNEKRKKEFPHIYVILAVMIGLMALATYIIPAGEYERVESPDGREMID
CCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
PASYKRVEQTPVDILGLLTAVPKGMTEAAPIIVFTFVIGGAFAVLRKASVIELGVRLLAD
CHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QFRNKPVFVTPVLIFVFSGISCFIGTPELSIVYVPVILPLLLSLGYDRMTAAAIALCGTI
HHCCCCEEHHHHHHHHHCCCHHEECCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHH
AGFTSALTNPFTVGTSQMISGLPLYSGMGYRAVIFVVVTAIAAVYVLKYAEKIRAHPEKS
HHHHHHHCCCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
LTGKEAVEPVPAFKAGGRVKWAGIAALGLFAGLIGCVIYFRWDMLTMAGYFLALGIIPAY
CCCHHHCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAGMNSRDIAESFNEGFKEVLVGAMICGIARAAAVVMADGQIMDTIVYGLSHAVSQLPSY
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHH
LTVTAMLFTQMLFNFFVPSGSGQALIMMPIMAPLADIVGITRQTAILAFQFGDGFSNIVF
HHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCEE
PTSGYFMATLAISRIAWNKWLRFILPLFCLWMGAAVLFLMFANAVGWS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]