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The map label for this gene is ybfM [H]

Identifier: 52787034

GI number: 52787034

Start: 3194071

End: 3194553

Strand: Direct

Name: ybfM [H]

Synonym: BLi03338

Alternate gene names: 52787034

Gene position: 3194071-3194553 (Clockwise)

Preceding gene: 52787033

Following gene: 52787035

Centisome position: 75.64

GC content: 44.72

Gene sequence:

>483_bases
ATGGAGTTGGCAAAAGAATTGATTTCCCAATACGGGTATTTCGCGATATTCGGGATGCTTGTCCTCGGAATTGTAGGCCT
GCCGATACCCGATGAAGTCATGATGACATTTGTCGGGTATCTGTCTTCTATTCATATATTAAACTATGAGATGTGCCTTT
TGATCAGTTTTTCAGGTGCGATATCAGGGATGCTCATCAGTTATTTTCTAGGGAAGAAAATCGGTAAACCGCTGCTCGAT
AAGTTCGGGAAATGGATCGGTCTGACGCCGAAAAGACTGGACACCGTGCACCGCTGGTTTGAAAAATACGGCCCGTGGAC
GATTCTTTTCGGCTATTTTGTCCCCGGAATCCGCCATGTGACATGCTATCTGTCCGGCATGAACGAGATGGACATGAAAA
GGTTCCTGATTTATGCCGGATCAGGAGCTTTTATTTGGTGTCTTGTTTTTATTACGATCGGATACACAATCGGCGTGATT
TAA

Upstream 100 bases:

>100_bases
CATTTTGATCATGCTGTTCCTGTCCTTTCTTATGGTCAGCAAAATCAAAGTCATCAGCCTGAAGGGGAAAAAACTATTGA
AGAAAGTGAGCTAGTTTTTA

Downstream 100 bases:

>100_bases
ATACCGCTTGCATCCCGGATGATCAGTAAAGGAGTGAACAGCTTGAAAAAGCGGCTTTACCGGTTTTTGATTGAGTTGAC
GAATAAAAAGGGCGTGTCCC

Product: YbfM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MELAKELISQYGYFAIFGMLVLGIVGLPIPDEVMMTFVGYLSSIHILNYEMCLLISFSGAISGMLISYFLGKKIGKPLLD
KFGKWIGLTPKRLDTVHRWFEKYGPWTILFGYFVPGIRHVTCYLSGMNEMDMKRFLIYAGSGAFIWCLVFITIGYTIGVI

Sequences:

>Translated_160_residues
MELAKELISQYGYFAIFGMLVLGIVGLPIPDEVMMTFVGYLSSIHILNYEMCLLISFSGAISGMLISYFLGKKIGKPLLD
KFGKWIGLTPKRLDTVHRWFEKYGPWTILFGYFVPGIRHVTCYLSGMNEMDMKRFLIYAGSGAFIWCLVFITIGYTIGVI
>Mature_160_residues
MELAKELISQYGYFAIFGMLVLGIVGLPIPDEVMMTFVGYLSSIHILNYEMCLLISFSGAISGMLISYFLGKKIGKPLLD
KFGKWIGLTPKRLDTVHRWFEKYGPWTILFGYFVPGIRHVTCYLSGMNEMDMKRFLIYAGSGAFIWCLVFITIGYTIGVI

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=164, Percent_Identity=30.4878048780488, Blast_Score=72, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 18138; Mature: 18138

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELAKELISQYGYFAIFGMLVLGIVGLPIPDEVMMTFVGYLSSIHILNYEMCLLISFSGA
CCHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEHHHHH
ISGMLISYFLGKKIGKPLLDKFGKWIGLTPKRLDTVHRWFEKYGPWTILFGYFVPGIRHV
HHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEHHHHHHCHHHHH
TCYLSGMNEMDMKRFLIYAGSGAFIWCLVFITIGYTIGVI
HHHHCCCCHHHHHHHHHEECCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MELAKELISQYGYFAIFGMLVLGIVGLPIPDEVMMTFVGYLSSIHILNYEMCLLISFSGA
CCHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEHHHHH
ISGMLISYFLGKKIGKPLLDKFGKWIGLTPKRLDTVHRWFEKYGPWTILFGYFVPGIRHV
HHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEHHHHHHCHHHHH
TCYLSGMNEMDMKRFLIYAGSGAFIWCLVFITIGYTIGVI
HHHHCCCCHHHHHHHHHEECCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]