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The map label for this gene is psd [H]

Identifier: 52787035

GI number: 52787035

Start: 3194596

End: 3195387

Strand: Direct

Name: psd [H]

Synonym: BLi03339

Alternate gene names: 52787035

Gene position: 3194596-3195387 (Clockwise)

Preceding gene: 52787034

Following gene: 52787038

Centisome position: 75.65

GC content: 46.34

Gene sequence:

>792_bases
TTGAAAAAGCGGCTTTACCGGTTTTTGATTGAGTTGACGAATAAAAAGGGCGTGTCCCGGATGCTGGAAAAGTTTGCTCA
GTCAAAGCTAAGCAAACCTCTCATCCCCTCCTATATCAAAACCTTTCATATTAATACAGAAGAGATGCTGGAAGATGTCC
GCTCTTTTAACAGCCTGCACGAGCTGTTCATCAGAAAATTAAAGAGCGGTGCACGCCCCCTTCCCGCTGATCCAAACAGC
CTGGTCAGCCCTGTGGACGGCGTCATCGAAGAAATGGGCACCATCACGCGCGACAAGCAATTTACCGTCAAACAAAAACT
CTATTCTGTAGAAGAAATGATCGGACGATCCGAGATCGTGAACCGCTATGTCGGCGGAACCTATATCATTATCTATTTAA
GTCCGAGAGACTACCACAGAATTCACAGCCCGGCTTACGGCACACTTGAAACGCAGTATTCGCTGGGAAGCACGTCTTAC
CCTGTGAATAAAATCGGTTTGACATACGGGAAATCGCCGCTGACAAAAAACTACCGGATGATTTCCGAATTTAAGCATCA
ATATGGGTCCGCCCTGCTTGTGAAGGTCGGAGCGATGTATATTAACTCGATCGTGATGCTCCAGGAGTCAAAAGAATGGC
GCCGAGGCGACGAAATCGCATATTTCTCTTTCGGCTCAACCGTTATTCTGCTGTTTGAAAAGGATACCTTTATTCCTGAT
GAACGCCTTCACCCCTCTCTTCAAGTCAAAATGGGAGAGGTGTTAGGATCTCTTGCCAAAAGAACATCATAA

Upstream 100 bases:

>100_bases
AGCTTTTATTTGGTGTCTTGTTTTTATTACGATCGGATACACAATCGGCGTGATTTAAATACCGCTTGCATCCCGGATGA
TCAGTAAAGGAGTGAACAGC

Downstream 100 bases:

>100_bases
TGCACCGCCCCCGAAATGTGAACTGACCCGTTAAAATGAGACTTAGAAAAAACACCTATGCTGCCTGTCCCCTGTATTCC
AGTGGGGACAGGTAGTTTAA

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MKKRLYRFLIELTNKKGVSRMLEKFAQSKLSKPLIPSYIKTFHINTEEMLEDVRSFNSLHELFIRKLKSGARPLPADPNS
LVSPVDGVIEEMGTITRDKQFTVKQKLYSVEEMIGRSEIVNRYVGGTYIIIYLSPRDYHRIHSPAYGTLETQYSLGSTSY
PVNKIGLTYGKSPLTKNYRMISEFKHQYGSALLVKVGAMYINSIVMLQESKEWRRGDEIAYFSFGSTVILLFEKDTFIPD
ERLHPSLQVKMGEVLGSLAKRTS

Sequences:

>Translated_263_residues
MKKRLYRFLIELTNKKGVSRMLEKFAQSKLSKPLIPSYIKTFHINTEEMLEDVRSFNSLHELFIRKLKSGARPLPADPNS
LVSPVDGVIEEMGTITRDKQFTVKQKLYSVEEMIGRSEIVNRYVGGTYIIIYLSPRDYHRIHSPAYGTLETQYSLGSTSY
PVNKIGLTYGKSPLTKNYRMISEFKHQYGSALLVKVGAMYINSIVMLQESKEWRRGDEIAYFSFGSTVILLFEKDTFIPD
ERLHPSLQVKMGEVLGSLAKRTS
>Mature_263_residues
MKKRLYRFLIELTNKKGVSRMLEKFAQSKLSKPLIPSYIKTFHINTEEMLEDVRSFNSLHELFIRKLKSGARPLPADPNS
LVSPVDGVIEEMGTITRDKQFTVKQKLYSVEEMIGRSEIVNRYVGGTYIIIYLSPRDYHRIHSPAYGTLETQYSLGSTSY
PVNKIGLTYGKSPLTKNYRMISEFKHQYGSALLVKVGAMYINSIVMLQESKEWRRGDEIAYFSFGSTVILLFEKDTFIPD
ERLHPSLQVKMGEVLGSLAKRTS

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Membrane-Associated [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI13489112, Length=281, Percent_Identity=28.4697508896797, Blast_Score=91, Evalue=1e-18,
Organism=Escherichia coli, GI1790604, Length=252, Percent_Identity=30.1587301587302, Blast_Score=117, Evalue=8e-28,
Organism=Caenorhabditis elegans, GI71980840, Length=257, Percent_Identity=23.3463035019455, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI71980843, Length=228, Percent_Identity=24.1228070175439, Blast_Score=72, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6321609, Length=236, Percent_Identity=31.3559322033898, Blast_Score=91, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24649526, Length=301, Percent_Identity=26.9102990033223, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24649528, Length=301, Percent_Identity=26.9102990033223, Blast_Score=78, Evalue=6e-15,
Organism=Drosophila melanogaster, GI24649524, Length=301, Percent_Identity=26.9102990033223, Blast_Score=78, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR005221 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 30166; Mature: 30166

Theoretical pI: Translated: 10.02; Mature: 10.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRLYRFLIELTNKKGVSRMLEKFAQSKLSKPLIPSYIKTFHINTEEMLEDVRSFNSLH
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHH
ELFIRKLKSGARPLPADPNSLVSPVDGVIEEMGTITRDKQFTVKQKLYSVEEMIGRSEIV
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
NRYVGGTYIIIYLSPRDYHRIHSPAYGTLETQYSLGSTSYPVNKIGLTYGKSPLTKNYRM
HHHCCCEEEEEEECCCHHHHHCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCHHHHH
ISEFKHQYGSALLVKVGAMYINSIVMLQESKEWRRGDEIAYFSFGSTVILLFEKDTFIPD
HHHHHHHHCCHHHHHHHHHHHHHHHHEECCHHHCCCCCEEEEECCCEEEEEEECCCCCCC
ERLHPSLQVKMGEVLGSLAKRTS
HHCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKRLYRFLIELTNKKGVSRMLEKFAQSKLSKPLIPSYIKTFHINTEEMLEDVRSFNSLH
CHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHH
ELFIRKLKSGARPLPADPNSLVSPVDGVIEEMGTITRDKQFTVKQKLYSVEEMIGRSEIV
HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
NRYVGGTYIIIYLSPRDYHRIHSPAYGTLETQYSLGSTSYPVNKIGLTYGKSPLTKNYRM
HHHCCCEEEEEEECCCHHHHHCCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCHHHHH
ISEFKHQYGSALLVKVGAMYINSIVMLQESKEWRRGDEIAYFSFGSTVILLFEKDTFIPD
HHHHHHHHCCHHHHHHHHHHHHHHHHEECCHHHCCCCCEEEEECCCEEEEEEECCCCCCC
ERLHPSLQVKMGEVLGSLAKRTS
HHCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA