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The map label for this gene is yciC [H]

Identifier: 52786936

GI number: 52786936

Start: 3092204

End: 3093385

Strand: Direct

Name: yciC [H]

Synonym: BLi03212

Alternate gene names: 52786936

Gene position: 3092204-3093385 (Clockwise)

Preceding gene: 52786934

Following gene: 52786937

Centisome position: 73.23

GC content: 47.63

Gene sequence:

>1182_bases
ATGAAGGAAAACCTGATTCCGGTCACTGTTTTAAGCGGTTATCTAGGGTCCGGGAAAACGACGCTGCTGCAGCATGTCCT
GCATGAAGCGCACGGCTTGAAAATCGCCGTGATCGTCAATGATATGAGCGAGATTAATATCGACGGCTCCCTCGTGAAAA
AAGGTGACCTCATCCGCACGGATGAAAAGCTTGTCGAAATGCAGAACGGCTGCATTTGCTGTACGCTGAGAGACGATCTG
CTCATCGAAGTCAAAAAGCTGGCGGAGAACGGCGGAATCGATTATATTCTCATTGAATCTTCCGGTATCAGCGAGCCGAT
TCCCGTCGCCCAAACCTTTACGTACAAAGATGAGGAGCTGAATATTGATTTAGGCAAATATTGCAGGCTTGATACAATGG
TCACCGTCGTCGACGGCAGCCGTTTTTTTGAGGACTTCGCTTCGGGCGAGAGCCTATTGGAACGGAAGCAGGCGGCAGAT
GAAACGGACAGCCGGGAAGTGGCCGACCTTTTAATTGAGCAAATTGAATTTGCCGATGTCCTCATTTTGAATAAAACTGA
TTTACTCAATGAAGAAGAGCAGGAAAAGCTGTTCTGGTCCCTGAGAAAACTGAATCCGGACTGCAGAATCATTTCTGCGG
CATTCGCAAAAGTGCCGCTTTCGGCCATCATGAATACGAAATCGTTCGATTTTGAAAAAGCAAGTCAATCAGCGGGATGG
ATCAAAGAGCTGAATGAAGAGCACACACCTGAAACAGAGGAATTCGGAATCTCTTCTTTCGTCTATCAAAAGCAAAGGCC
TTTCCATCCTGAAAGACTGAAGCGCTGGCTTGAAAACTGGCCGCCGCAAATTATCAGAGCAAAAGGCTTCTTCTGGCTTG
CTTCTCGAAATGACACAGCAGGCCTTCTGTCCCAGGCAGGCTCTTCCCTGATGATCCAAAGCGCGGGCCCCTGGATTGCA
GCGTCTACCGAGGAAGAACAAAAGCTCGCGTTTGAAGAGGACCCTAATTTGAAAGCGGACTGGGATGAAACATACGGAGA
CCGGAAAACGGAAATCGTTTTTATCGGCATTGACATGAATCAGGAAGACATTATCCGCTCCCTGGATCAGACCCTTCTTA
CAGATAAAGAAATGAATTCAGACTGGTCGGCCTTACTTGATTCACTGCCTGAGTATATTTAA

Upstream 100 bases:

>100_bases
TATATCTAAATATAACATATTTCTTGTATTTTTTTCACAAGTCCAGTAAGATTTCCTTTGTGCAAATCGAAACAATTACG
TTTTAAGGAAGGTGAAAAAC

Downstream 100 bases:

>100_bases
CTATCATTTCCTCTTTTCAAATCGTAATTATTACGATACAATGATACAGGACCATTAAATCGGAACCATTTCAGTTTTAC
ATTGAGAGGAGAAATACCAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 393; Mature: 393

Protein sequence:

>393_residues
MKENLIPVTVLSGYLGSGKTTLLQHVLHEAHGLKIAVIVNDMSEINIDGSLVKKGDLIRTDEKLVEMQNGCICCTLRDDL
LIEVKKLAENGGIDYILIESSGISEPIPVAQTFTYKDEELNIDLGKYCRLDTMVTVVDGSRFFEDFASGESLLERKQAAD
ETDSREVADLLIEQIEFADVLILNKTDLLNEEEQEKLFWSLRKLNPDCRIISAAFAKVPLSAIMNTKSFDFEKASQSAGW
IKELNEEHTPETEEFGISSFVYQKQRPFHPERLKRWLENWPPQIIRAKGFFWLASRNDTAGLLSQAGSSLMIQSAGPWIA
ASTEEEQKLAFEEDPNLKADWDETYGDRKTEIVFIGIDMNQEDIIRSLDQTLLTDKEMNSDWSALLDSLPEYI

Sequences:

>Translated_393_residues
MKENLIPVTVLSGYLGSGKTTLLQHVLHEAHGLKIAVIVNDMSEINIDGSLVKKGDLIRTDEKLVEMQNGCICCTLRDDL
LIEVKKLAENGGIDYILIESSGISEPIPVAQTFTYKDEELNIDLGKYCRLDTMVTVVDGSRFFEDFASGESLLERKQAAD
ETDSREVADLLIEQIEFADVLILNKTDLLNEEEQEKLFWSLRKLNPDCRIISAAFAKVPLSAIMNTKSFDFEKASQSAGW
IKELNEEHTPETEEFGISSFVYQKQRPFHPERLKRWLENWPPQIIRAKGFFWLASRNDTAGLLSQAGSSLMIQSAGPWIA
ASTEEEQKLAFEEDPNLKADWDETYGDRKTEIVFIGIDMNQEDIIRSLDQTLLTDKEMNSDWSALLDSLPEYI
>Mature_393_residues
MKENLIPVTVLSGYLGSGKTTLLQHVLHEAHGLKIAVIVNDMSEINIDGSLVKKGDLIRTDEKLVEMQNGCICCTLRDDL
LIEVKKLAENGGIDYILIESSGISEPIPVAQTFTYKDEELNIDLGKYCRLDTMVTVVDGSRFFEDFASGESLLERKQAAD
ETDSREVADLLIEQIEFADVLILNKTDLLNEEEQEKLFWSLRKLNPDCRIISAAFAKVPLSAIMNTKSFDFEKASQSAGW
IKELNEEHTPETEEFGISSFVYQKQRPFHPERLKRWLENWPPQIIRAKGFFWLASRNDTAGLLSQAGSSLMIQSAGPWIA
ASTEEEQKLAFEEDPNLKADWDETYGDRKTEIVFIGIDMNQEDIIRSLDQTLLTDKEMNSDWSALLDSLPEYI

Specific function: May bind GTP. Might act as metal chaperone (Potential). Contributes to optimal growth under starvation for zinc [H]

COG id: COG0523

COG function: function code R; Putative GTPases (G3E family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 cobW C-terminal domain [H]

Homologues:

Organism=Homo sapiens, GI33469141, Length=230, Percent_Identity=34.3478260869565, Blast_Score=129, Evalue=5e-30,
Organism=Homo sapiens, GI126722884, Length=230, Percent_Identity=33.9130434782609, Blast_Score=126, Evalue=3e-29,
Organism=Homo sapiens, GI146231952, Length=230, Percent_Identity=33.9130434782609, Blast_Score=124, Evalue=2e-28,
Organism=Homo sapiens, GI148727351, Length=312, Percent_Identity=28.8461538461538, Blast_Score=123, Evalue=3e-28,
Organism=Homo sapiens, GI223941779, Length=205, Percent_Identity=35.1219512195122, Blast_Score=116, Evalue=4e-26,
Organism=Homo sapiens, GI223941776, Length=220, Percent_Identity=32.2727272727273, Blast_Score=108, Evalue=7e-24,
Organism=Homo sapiens, GI119120938, Length=138, Percent_Identity=38.4057971014493, Blast_Score=93, Evalue=5e-19,
Organism=Escherichia coli, GI87082430, Length=373, Percent_Identity=28.686327077748, Blast_Score=121, Evalue=7e-29,
Organism=Escherichia coli, GI1788499, Length=213, Percent_Identity=28.169014084507, Blast_Score=77, Evalue=3e-15,
Organism=Saccharomyces cerevisiae, GI6324356, Length=238, Percent_Identity=28.1512605042017, Blast_Score=99, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003495
- InterPro:   IPR011629 [H]

Pfam domain/function: PF02492 cobW; PF07683 CobW_C [H]

EC number: NA

Molecular weight: Translated: 44481; Mature: 44481

Theoretical pI: Translated: 4.26; Mature: 4.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKENLIPVTVLSGYLGSGKTTLLQHVLHEAHGLKIAVIVNDMSEINIDGSLVKKGDLIRT
CCCCCEEHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCEECCCCCEEC
DEKLVEMQNGCICCTLRDDLLIEVKKLAENGGIDYILIESSGISEPIPVAQTFTYKDEEL
HHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCEEEEECCCCC
NIDLGKYCRLDTMVTVVDGSRFFEDFASGESLLERKQAADETDSREVADLLIEQIEFADV
CCCHHHHEEECEEEEEECCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEE
LILNKTDLLNEEEQEKLFWSLRKLNPDCRIISAAFAKVPLSAIMNTKSFDFEKASQSAGW
EEECCHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHH
IKELNEEHTPETEEFGISSFVYQKQRPFHPERLKRWLENWPPQIIRAKGFFWLASRNDTA
HHHHHHCCCCCHHHHCCHHHHHHCCCCCCHHHHHHHHHHCCHHHEEECCEEEEECCCCHH
GLLSQAGSSLMIQSAGPWIAASTEEEQKLAFEEDPNLKADWDETYGDRKTEIVFIGIDMN
HHHHHCCCEEEEECCCCEEEECCCHHHHCCCCCCCCCCCCCHHHCCCCCEEEEEEEECCC
QEDIIRSLDQTLLTDKEMNSDWSALLDSLPEYI
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MKENLIPVTVLSGYLGSGKTTLLQHVLHEAHGLKIAVIVNDMSEINIDGSLVKKGDLIRT
CCCCCEEHHHHHCCCCCCHHHHHHHHHHHHCCCEEEEEEECHHHCCCCCCEECCCCCEEC
DEKLVEMQNGCICCTLRDDLLIEVKKLAENGGIDYILIESSGISEPIPVAQTFTYKDEEL
HHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCEEEEECCCCC
NIDLGKYCRLDTMVTVVDGSRFFEDFASGESLLERKQAADETDSREVADLLIEQIEFADV
CCCHHHHEEECEEEEEECCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEE
LILNKTDLLNEEEQEKLFWSLRKLNPDCRIISAAFAKVPLSAIMNTKSFDFEKASQSAGW
EEECCHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCHH
IKELNEEHTPETEEFGISSFVYQKQRPFHPERLKRWLENWPPQIIRAKGFFWLASRNDTA
HHHHHHCCCCCHHHHCCHHHHHHCCCCCCHHHHHHHHHHCCHHHEEECCEEEEECCCCHH
GLLSQAGSSLMIQSAGPWIAASTEEEQKLAFEEDPNLKADWDETYGDRKTEIVFIGIDMN
HHHHHCCCEEEEECCCCEEEECCCHHHHCCCCCCCCCCCCCHHHCCCCCEEEEEEEECCC
QEDIIRSLDQTLLTDKEMNSDWSALLDSLPEYI
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377; 9811636 [H]