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The map label for this gene is ycdH [H]

Identifier: 52786937

GI number: 52786937

Start: 3093484

End: 3094515

Strand: Direct

Name: ycdH [H]

Synonym: BLi03213

Alternate gene names: 52786937

Gene position: 3093484-3094515 (Clockwise)

Preceding gene: 52786936

Following gene: 52786939

Centisome position: 73.26

GC content: 42.25

Gene sequence:

>1032_bases
ATGAAAAAAACATTCGGAATAGCATCTGCATTCATTCTTGCTGCCGGATTAACAGCGGGTTGCTCAAGCAATGGAGCTTC
CAGTGAACAAAAAGAAAATAAAGACACGCTGGACATCTATACAACCATTTATCCGCTTGAAGACTTCACCAAAAAGATCG
GCGGAGAATATGTGAACGTTAAAAGTGTTTACCCGCCAAACGTTGAAGCGCACACTTACGAGCCAAGCTCAAAAACGATG
GCGGAAATTTCCGACTCGGATGCCTTTATATACTCTGGAGTCGGTGTTGAAGGATTCGCAGACAAAGCTGTAAGCACACT
TAAAAACAGCGACGTCAAAATCGTCAAAGCCGGGGAGGGCATTGACCTTCTGTCACGTGAAGAAGAAGGCGAACATGATG
AGCATGCACATGGAGAAGAACACGGTGAGCACGATGAGCATGCACATGAAGAAGAACATGAACACGGAGAAGCCGAAGGT
CACGATCATCATCACGACCATGGAGATCATGACCCGCACGCATGGCTTGATCCTGTCCTTGCTGAAAAAATGGCCGAAAA
CATTAAAGACCAACTCGTAAAATTAGAACCTGAACACGAAAAAACGTTTACGAAAAACTATGAGTCATTAAAAAAAGACT
TGGAGCAGCTTGACAAAGACTTCAAACAAACAGTCGACAAAGCTGATAAAAAAGAAATTCTCGTCTCACATGCCGCCTAC
GGCTACTGGGAAAAACGCTACGGCATTAAGCAGATAAGCGTTCTCGGCCTTTCGCCTACTGAGGAACCTTCACAAAAGCA
GCTTGAAAACATTGTTAAAACAGCGAAAGAACATAATATTAAATATATCATTTTTGAAAGCAATGTCAGCAGCAAAATCT
CCGAGATCATCAAAAAAGAAATCGGAGCGGAAAGTCTGACGATGAAAAACCTTGAATCTGTAACAAAAGAAGACATTGAA
AGCGGCAAAGATTATACCGCCATCATGAAAGAAAACCTGGACGTCTTGAAAAAAGCTTTATCAAGCAAATAA

Upstream 100 bases:

>100_bases
AACTATCATTTCCTCTTTTCAAATCGTAATTATTACGATACAATGATACAGGACCATTAAATCGGAACCATTTCAGTTTT
ACATTGAGAGGAGAAATACC

Downstream 100 bases:

>100_bases
CAGAGAACAAGCGCATGAGATGTCATGCGCTTGTTTTTTAAATGGACGAAAAAAAAGGCCGGAAACATCCGGTCTTTTTA
ATTTATTAATCCATATTAAA

Product: YcdH

Products: Zn (II) [Cytoplasm]; ADP; phosphate [C]

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MKKTFGIASAFILAAGLTAGCSSNGASSEQKENKDTLDIYTTIYPLEDFTKKIGGEYVNVKSVYPPNVEAHTYEPSSKTM
AEISDSDAFIYSGVGVEGFADKAVSTLKNSDVKIVKAGEGIDLLSREEEGEHDEHAHGEEHGEHDEHAHEEEHEHGEAEG
HDHHHDHGDHDPHAWLDPVLAEKMAENIKDQLVKLEPEHEKTFTKNYESLKKDLEQLDKDFKQTVDKADKKEILVSHAAY
GYWEKRYGIKQISVLGLSPTEEPSQKQLENIVKTAKEHNIKYIIFESNVSSKISEIIKKEIGAESLTMKNLESVTKEDIE
SGKDYTAIMKENLDVLKKALSSK

Sequences:

>Translated_343_residues
MKKTFGIASAFILAAGLTAGCSSNGASSEQKENKDTLDIYTTIYPLEDFTKKIGGEYVNVKSVYPPNVEAHTYEPSSKTM
AEISDSDAFIYSGVGVEGFADKAVSTLKNSDVKIVKAGEGIDLLSREEEGEHDEHAHGEEHGEHDEHAHEEEHEHGEAEG
HDHHHDHGDHDPHAWLDPVLAEKMAENIKDQLVKLEPEHEKTFTKNYESLKKDLEQLDKDFKQTVDKADKKEILVSHAAY
GYWEKRYGIKQISVLGLSPTEEPSQKQLENIVKTAKEHNIKYIIFESNVSSKISEIIKKEIGAESLTMKNLESVTKEDIE
SGKDYTAIMKENLDVLKKALSSK
>Mature_343_residues
MKKTFGIASAFILAAGLTAGCSSNGASSEQKENKDTLDIYTTIYPLEDFTKKIGGEYVNVKSVYPPNVEAHTYEPSSKTM
AEISDSDAFIYSGVGVEGFADKAVSTLKNSDVKIVKAGEGIDLLSREEEGEHDEHAHGEEHGEHDEHAHEEEHEHGEAEG
HDHHHDHGDHDPHAWLDPVLAEKMAENIKDQLVKLEPEHEKTFTKNYESLKKDLEQLDKDFKQTVDKADKKEILVSHAAY
GYWEKRYGIKQISVLGLSPTEEPSQKQLENIVKTAKEHNIKYIIFESNVSSKISEIIKKEIGAESLTMKNLESVTKEDIE
SGKDYTAIMKENLDVLKKALSSK

Specific function: Part of the high-affinity ABC transporter complex AdcABC involved in zinc import (Probable) [H]

COG id: COG0803

COG function: function code P; ABC-type metal ion transport system, periplasmic component/surface adhesin

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 9 family [H]

Homologues:

Organism=Escherichia coli, GI87081990, Length=286, Percent_Identity=22.7272727272727, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006127
- InterPro:   IPR006129
- InterPro:   IPR006128 [H]

Pfam domain/function: PF01297 SBP_bac_9 [H]

EC number: NA

Molecular weight: Translated: 38359; Mature: 38359

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTFGIASAFILAAGLTAGCSSNGASSEQKENKDTLDIYTTIYPLEDFTKKIGGEYVNV
CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEHHEEECHHHHHHHHCCCEEEE
KSVYPPNVEAHTYEPSSKTMAEISDSDAFIYSGVGVEGFADKAVSTLKNSDVKIVKAGEG
ECCCCCCCCCEEECCCHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEECCCC
IDLLSREEEGEHDEHAHGEEHGEHDEHAHEEEHEHGEAEGHDHHHDHGDHDPHAWLDPVL
CHHHCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
AEKMAENIKDQLVKLEPEHEKTFTKNYESLKKDLEQLDKDFKQTVDKADKKEILVSHAAY
HHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
GYWEKRYGIKQISVLGLSPTEEPSQKQLENIVKTAKEHNIKYIIFESNVSSKISEIIKKE
HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
IGAESLTMKNLESVTKEDIESGKDYTAIMKENLDVLKKALSSK
HCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKTFGIASAFILAAGLTAGCSSNGASSEQKENKDTLDIYTTIYPLEDFTKKIGGEYVNV
CCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCEEEHHEEECHHHHHHHHCCCEEEE
KSVYPPNVEAHTYEPSSKTMAEISDSDAFIYSGVGVEGFADKAVSTLKNSDVKIVKAGEG
ECCCCCCCCCEEECCCHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEECCCC
IDLLSREEEGEHDEHAHGEEHGEHDEHAHEEEHEHGEAEGHDHHHDHGDHDPHAWLDPVL
CHHHCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH
AEKMAENIKDQLVKLEPEHEKTFTKNYESLKKDLEQLDKDFKQTVDKADKKEILVSHAAY
HHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
GYWEKRYGIKQISVLGLSPTEEPSQKQLENIVKTAKEHNIKYIIFESNVSSKISEIIKKE
HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
IGAESLTMKNLESVTKEDIESGKDYTAIMKENLDVLKKALSSK
HCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Zn (II) [Periplasm]; H2O; ATP [C]

Specific reaction: Zn (II) [Periplasm] + H2O + ATP = Zn (II) [Cytoplasm] + ADP + phosphate [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9274031; 9384377; 9811636 [H]