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The map label for this gene is yrvJ1 [H]

Identifier: 52786617

GI number: 52786617

Start: 2773947

End: 2775518

Strand: Direct

Name: yrvJ1 [H]

Synonym: BLi02884

Alternate gene names: 52786617

Gene position: 2773947-2775518 (Clockwise)

Preceding gene: 52786612

Following gene: 52786625

Centisome position: 65.69

GC content: 50.7

Gene sequence:

>1572_bases
ATGAAAAAAAGAGCGGTATTGATCCTATCGATGATGCTGGCAGCACAAGCAGCCTTTTATACATCGTCAAACACAGCTTC
TGCAGCCATCGGGGAAGCCGTGATTGCCACCGATGAAATCAATGTCAGAAGCGGGCCTGGACTGAGCCACGAAATCGTCA
GCGTCGTCAGCAGGAATGAAAGCTATCCGATTCTTGAAGAACGCGGGGATTGGGTGCAAATCCAGCTGAACGGCGGGCAA
AAAGGCTGGGTCGTATCCTGGCTGATCAAGAAAAAGAGCCAAGTCTCCAGCGGATCTGATTCCGCATCGGGAAAAGTCAC
ATCTTCCGAAGCAAACTTGAGAATCAGAAAAGGCCCCGGCACTTCATATGAAGTCCAAGGCGTATTCCCTGAAGGAGAAC
AGGCTGACCTGCTAAAGACCGACGGAAAATGGATAAAGATTTCCTATCAGAACATCACAGGCTGGGTCTATTCAGATTAT
GTCAATCAAGGTTCAGGCGCGAAACAGTCTCAATCGTCTTCATCACATGCTTCATCATCAAAATCGGGAACGGTCGGCGT
ATCCACCTTAAATGTCAGGAGCACAGCTTCCCATCAAGGCCGGATTATTGCCACGCTCCAACGGAATGCAAGTGTGACGA
TTTTAAACGAACAGCACGGCTGGTATGAAATCGAATTTAATGGACAAAAAGGCTGGGCCGCAAGCCACTATATTCTCGAA
GGAAACAAACAGAACAGCGGAACCTCGGAAACAAGCAGCAGCTCCGAAGCAAAACGGCAGGCCACCATCGTGTATGAAGG
CACAAATGTTAGAAGCGGGCCTTCGACATCCTCAGCGATCGTCAAACGCACGGGAAAAGGCGAGTCTTACCCGATCGTCT
CTACAAAAGGAGACTGGTATGAAATCAAACTGTCAAACGGCGATTCCGCTTATGTCGCAAGCTGGGTCGTTCAGACTGTT
GACCAGGCAGGCTCAGCCGGAGATTCGAAAAGCGCAGCACCGCCTTTGGCAAAGCGGTCAAGCTCGGGAGGCACAATCAA
AAATAAAACGGTTGTCATCGATGCCGGACATGGAGGACATGACAGCGGGACAATCGGAACGCGGGGGACGCTCGAAAAAC
GGCTGACCATCAAAACGGCAACGCTTCTTGCCGCGAAACTGAGAGCCGATGGCGTCAACGTCTATATGACGCGGAATGAC
GATTCTTTCGTCAGCCTTCAGTCGCGGGTCGCGACCTCTCATTACCGAAACGCCGACGCTTTTATCAGCATTCATTATGA
TAGCTTTCCAAATGCGTCCGTCAGGGGAAATACGGCCTATTACTACAGCCCGTCCAAAGACCGGAAGCTCGCAGCAGACG
TGCAGTCCGAGATCGAAAGGCACTCGCCTCTGCCAAGCCGCGGCGTACTATTCGGGGACTACTTCGTATTAAGAGAAAAT
AAACAGCCCGCCGCATTGTTTGAACTCGGCTACTTGAGCCATCCTCAAGAAGAAGCGGTAGTCAGCACGAACGCTTACAG
AGAAAGAGTGACAGACGGCATCAGAAGCGGTCTAGAAAACTATTTTGACTAA

Upstream 100 bases:

>100_bases
AATCATTTTCATTTTATTAAAAAAACGGCAAGGAATATACGATATAGAAGAAGAAGTAGTGTTCCAAGTTTTTTACCGAA
AGGAGGAGATGGGAATCAAT

Downstream 100 bases:

>100_bases
TTTAAAAAGCTCCCAATCGGGAGCTTTTTATGCTTTCGAATCCATAATAAACGTGACGGGACCCGAATTTGTCAGCTTGA
CATCCATCATTTCTCCAAAT

Product: YrvJ1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 523; Mature: 523

Protein sequence:

>523_residues
MKKRAVLILSMMLAAQAAFYTSSNTASAAIGEAVIATDEINVRSGPGLSHEIVSVVSRNESYPILEERGDWVQIQLNGGQ
KGWVVSWLIKKKSQVSSGSDSASGKVTSSEANLRIRKGPGTSYEVQGVFPEGEQADLLKTDGKWIKISYQNITGWVYSDY
VNQGSGAKQSQSSSSHASSSKSGTVGVSTLNVRSTASHQGRIIATLQRNASVTILNEQHGWYEIEFNGQKGWAASHYILE
GNKQNSGTSETSSSSEAKRQATIVYEGTNVRSGPSTSSAIVKRTGKGESYPIVSTKGDWYEIKLSNGDSAYVASWVVQTV
DQAGSAGDSKSAAPPLAKRSSSGGTIKNKTVVIDAGHGGHDSGTIGTRGTLEKRLTIKTATLLAAKLRADGVNVYMTRND
DSFVSLQSRVATSHYRNADAFISIHYDSFPNASVRGNTAYYYSPSKDRKLAADVQSEIERHSPLPSRGVLFGDYFVLREN
KQPAALFELGYLSHPQEEAVVSTNAYRERVTDGIRSGLENYFD

Sequences:

>Translated_523_residues
MKKRAVLILSMMLAAQAAFYTSSNTASAAIGEAVIATDEINVRSGPGLSHEIVSVVSRNESYPILEERGDWVQIQLNGGQ
KGWVVSWLIKKKSQVSSGSDSASGKVTSSEANLRIRKGPGTSYEVQGVFPEGEQADLLKTDGKWIKISYQNITGWVYSDY
VNQGSGAKQSQSSSSHASSSKSGTVGVSTLNVRSTASHQGRIIATLQRNASVTILNEQHGWYEIEFNGQKGWAASHYILE
GNKQNSGTSETSSSSEAKRQATIVYEGTNVRSGPSTSSAIVKRTGKGESYPIVSTKGDWYEIKLSNGDSAYVASWVVQTV
DQAGSAGDSKSAAPPLAKRSSSGGTIKNKTVVIDAGHGGHDSGTIGTRGTLEKRLTIKTATLLAAKLRADGVNVYMTRND
DSFVSLQSRVATSHYRNADAFISIHYDSFPNASVRGNTAYYYSPSKDRKLAADVQSEIERHSPLPSRGVLFGDYFVLREN
KQPAALFELGYLSHPQEEAVVSTNAYRERVTDGIRSGLENYFD
>Mature_523_residues
MKKRAVLILSMMLAAQAAFYTSSNTASAAIGEAVIATDEINVRSGPGLSHEIVSVVSRNESYPILEERGDWVQIQLNGGQ
KGWVVSWLIKKKSQVSSGSDSASGKVTSSEANLRIRKGPGTSYEVQGVFPEGEQADLLKTDGKWIKISYQNITGWVYSDY
VNQGSGAKQSQSSSSHASSSKSGTVGVSTLNVRSTASHQGRIIATLQRNASVTILNEQHGWYEIEFNGQKGWAASHYILE
GNKQNSGTSETSSSSEAKRQATIVYEGTNVRSGPSTSSAIVKRTGKGESYPIVSTKGDWYEIKLSNGDSAYVASWVVQTV
DQAGSAGDSKSAAPPLAKRSSSGGTIKNKTVVIDAGHGGHDSGTIGTRGTLEKRLTIKTATLLAAKLRADGVNVYMTRND
DSFVSLQSRVATSHYRNADAFISIHYDSFPNASVRGNTAYYYSPSKDRKLAADVQSEIERHSPLPSRGVLFGDYFVLREN
KQPAALFELGYLSHPQEEAVVSTNAYRERVTDGIRSGLENYFD

Specific function: Probably involved in cell-wall metabolism [H]

COG id: COG3103

COG function: function code T; SH3 domain protein

Gene ontology:

Cell location: Secreted, cell wall [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the N-acetylmuramoyl-L-alanine amidase 3 family [H]

Homologues:

Organism=Escherichia coli, GI1788776, Length=265, Percent_Identity=28.3018867924528, Blast_Score=99, Evalue=1e-21,
Organism=Escherichia coli, GI87082163, Length=244, Percent_Identity=27.0491803278689, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1790611, Length=226, Percent_Identity=28.7610619469027, Blast_Score=85, Evalue=9e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002508
- InterPro:   IPR017293
- InterPro:   IPR003646
- InterPro:   IPR013247 [H]

Pfam domain/function: PF01520 Amidase_3; PF08239 SH3_3 [H]

EC number: =3.5.1.28 [H]

Molecular weight: Translated: 56387; Mature: 56387

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRAVLILSMMLAAQAAFYTSSNTASAAIGEAVIATDEINVRSGPGLSHEIVSVVSRNE
CCCHHHHHHHHHHHHHHHEEECCCCCHHHHCCEEEEECCEEECCCCCCHHHHHHHHHCCC
SYPILEERGDWVQIQLNGGQKGWVVSWLIKKKSQVSSGSDSASGKVTSSEANLRIRKGPG
CCCHHCCCCCEEEEEECCCCCCEEEEEEEHHHHHCCCCCCCCCCEEECCCCCEEEEECCC
TSYEVQGVFPEGEQADLLKTDGKWIKISYQNITGWVYSDYVNQGSGAKQSQSSSSHASSS
CCEEEEEECCCCCCCCEEECCCCEEEEEEECEECEEEEHHHCCCCCCCCCCCCCCCCCCC
KSGTVGVSTLNVRSTASHQGRIIATLQRNASVTILNEQHGWYEIEFNGQKGWAASHYILE
CCCEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEEE
GNKQNSGTSETSSSSEAKRQATIVYEGTNVRSGPSTSSAIVKRTGKGESYPIVSTKGDWY
CCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHEECCCCCCCCEEECCCCEE
EIKLSNGDSAYVASWVVQTVDQAGSAGDSKSAAPPLAKRSSSGGTIKNKTVVIDAGHGGH
EEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCEEECCEEEEECCCCCC
DSGTIGTRGTLEKRLTIKTATLLAAKLRADGVNVYMTRNDDSFVSLQSRVATSHYRNADA
CCCCCCCCCCCCEEEEEEHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCE
FISIHYDSFPNASVRGNTAYYYSPSKDRKLAADVQSEIERHSPLPSRGVLFGDYFVLREN
EEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECC
KQPAALFELGYLSHPQEEAVVSTNAYRERVTDGIRSGLENYFD
CCCCEEEEECCCCCCCHHHEEEHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKRAVLILSMMLAAQAAFYTSSNTASAAIGEAVIATDEINVRSGPGLSHEIVSVVSRNE
CCCHHHHHHHHHHHHHHHEEECCCCCHHHHCCEEEEECCEEECCCCCCHHHHHHHHHCCC
SYPILEERGDWVQIQLNGGQKGWVVSWLIKKKSQVSSGSDSASGKVTSSEANLRIRKGPG
CCCHHCCCCCEEEEEECCCCCCEEEEEEEHHHHHCCCCCCCCCCEEECCCCCEEEEECCC
TSYEVQGVFPEGEQADLLKTDGKWIKISYQNITGWVYSDYVNQGSGAKQSQSSSSHASSS
CCEEEEEECCCCCCCCEEECCCCEEEEEEECEECEEEEHHHCCCCCCCCCCCCCCCCCCC
KSGTVGVSTLNVRSTASHQGRIIATLQRNASVTILNEQHGWYEIEFNGQKGWAASHYILE
CCCEEEEEEEEEECCCCCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEEE
GNKQNSGTSETSSSSEAKRQATIVYEGTNVRSGPSTSSAIVKRTGKGESYPIVSTKGDWY
CCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHEECCCCCCCCEEECCCCEE
EIKLSNGDSAYVASWVVQTVDQAGSAGDSKSAAPPLAKRSSSGGTIKNKTVVIDAGHGGH
EEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCEEECCEEEEECCCCCC
DSGTIGTRGTLEKRLTIKTATLLAAKLRADGVNVYMTRNDDSFVSLQSRVATSHYRNADA
CCCCCCCCCCCCEEEEEEHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCE
FISIHYDSFPNASVRGNTAYYYSPSKDRKLAADVQSEIERHSPLPSRGVLFGDYFVLREN
EEEEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECC
KQPAALFELGYLSHPQEEAVVSTNAYRERVTDGIRSGLENYFD
CCCCEEEEECCCCCCCHHHEEEHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]