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The map label for this gene is yrvN [H]

Identifier: 52786612

GI number: 52786612

Start: 2767668

End: 2768933

Strand: Direct

Name: yrvN [H]

Synonym: BLi02878

Alternate gene names: 52786612

Gene position: 2767668-2768933 (Clockwise)

Preceding gene: 52786591

Following gene: 52786617

Centisome position: 65.54

GC content: 51.34

Gene sequence:

>1266_bases
ATGAAACCACTCGCATTTCGAATGCGCCCTACAAAAATCGAAGAGGTTCTCGGCCAGGATCACCTGGTCGGGGAAGGAAA
GATCATTCATCGGATGGTGCAGGCCAAACACCTTTCATCGATGATTCTGTACGGCCCCCCGGGCATCGGCAAAACGTCGA
TCGCCACGGCGATTGCCGGCAGCACGAGCATCGCTTTCCGAAAGCTGAACGCAGTCATCAATAATAAAAAGGATATGGAA
GCCATTGCCGCCGAAGCAAAAATGTCGGGGCAGGTTATCTTAATCCTTGATGAGGTGCACCGGCTTGACAAAGGCAAGCA
GGACTTTCTCCTTCCGTATTTGGAAAACGGCATGATTATCATGATCGGGGCGACGACAGCCAACCCGTACCATGCGATCA
ATCCGGCGATCAGAAGCAGAACGCAGATTTTCGAGCTGCATCCGTTAGACCCTGAACAAATCAAAACGGCCATTAAACGG
GCGCTTGAAGATAAACACAGAGGCCTCGGTTCGTATGACGTTGCCGTCGATGATGAGGCGCTTGACCATTTGGCCCGCGG
CTGCGGCGGAGATGTCCGCTCAGCTTTGAATGCGCTCGAACTTGCCGTATTGTCCACAAAGGAAAACAGTGAGGGAGCGA
TACGCATTACATTGGAAATCGCAGAAGAATGCCTGCAGAAAAAAAGCTTTGTCCATGACAAAGATGGAGACGCGCATTAT
GATGTCATTTCCGCCTTCCAAAAATCAATCAGAGGCTCTGATGTCAATGCTGCACTGCACTACATGGCAAGGCTTATTGA
AGCGGGGGATTTGGAAAGCCTTGCACGGAGGCTGCTTGTTATCGCCTATGAGGATGTCGGGCTGGCGAGTCCGCAGGCTG
GTGGAAGAACGCTTCAAGCCATTCAAACGGCGGAACGAATCGGATTTCCGGAAGCGAGGATTCCGCTGGCCAACGCCGTG
ATTGAGCTCTGCCTGTCTCCTAAATCGAACTCGGCGATCCTTGCAGTTGACGAAGCGCTGTCAGACGTCCGCTCCGGAAA
GATCGGCGATGTGCCGAACCATTTAAAGGACGCCCATTACAAAGGAGCCGCTGAGCTTGGCAGAGGTGTGGAATACAAAT
ATCCGCACGATTACGAGAACGGCTGGGTCAAACAGCAGTACCTGCCTGATCCGCTGAAAAACAAAGTTTACTATCAGCCG
AAGCAGACGGGAAAATTTGAACTCGCACTGAAACAAGTATACGACAAGCTGATGAAACAAAAATAA

Upstream 100 bases:

>100_bases
TTCATTTTCGGCCTTATATTCAGCTTGCCATATTCATTTCTTTTCTAATCGTCTTTTTTCCGTTACTCTATAAAAAGAAT
ACATTCGGGAGAGATCAATC

Downstream 100 bases:

>100_bases
TAAACGGCCTGTTTCTTTTCATTAAGGAGGCCGTTTGTCTTGAAACCAAAAACGACAGCACCTCTGCTGTCGTTTTTGTA
TTACTTATCTTTCACCCTTT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MKPLAFRMRPTKIEEVLGQDHLVGEGKIIHRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDME
AIAAEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIIMIGATTANPYHAINPAIRSRTQIFELHPLDPEQIKTAIKR
ALEDKHRGLGSYDVAVDDEALDHLARGCGGDVRSALNALELAVLSTKENSEGAIRITLEIAEECLQKKSFVHDKDGDAHY
DVISAFQKSIRGSDVNAALHYMARLIEAGDLESLARRLLVIAYEDVGLASPQAGGRTLQAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAILAVDEALSDVRSGKIGDVPNHLKDAHYKGAAELGRGVEYKYPHDYENGWVKQQYLPDPLKNKVYYQP
KQTGKFELALKQVYDKLMKQK

Sequences:

>Translated_421_residues
MKPLAFRMRPTKIEEVLGQDHLVGEGKIIHRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDME
AIAAEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIIMIGATTANPYHAINPAIRSRTQIFELHPLDPEQIKTAIKR
ALEDKHRGLGSYDVAVDDEALDHLARGCGGDVRSALNALELAVLSTKENSEGAIRITLEIAEECLQKKSFVHDKDGDAHY
DVISAFQKSIRGSDVNAALHYMARLIEAGDLESLARRLLVIAYEDVGLASPQAGGRTLQAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAILAVDEALSDVRSGKIGDVPNHLKDAHYKGAAELGRGVEYKYPHDYENGWVKQQYLPDPLKNKVYYQP
KQTGKFELALKQVYDKLMKQK
>Mature_421_residues
MKPLAFRMRPTKIEEVLGQDHLVGEGKIIHRMVQAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVINNKKDME
AIAAEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIIMIGATTANPYHAINPAIRSRTQIFELHPLDPEQIKTAIKR
ALEDKHRGLGSYDVAVDDEALDHLARGCGGDVRSALNALELAVLSTKENSEGAIRITLEIAEECLQKKSFVHDKDGDAHY
DVISAFQKSIRGSDVNAALHYMARLIEAGDLESLARRLLVIAYEDVGLASPQAGGRTLQAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAILAVDEALSDVRSGKIGDVPNHLKDAHYKGAAELGRGVEYKYPHDYENGWVKQQYLPDPLKNKVYYQP
KQTGKFELALKQVYDKLMKQK

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=442, Percent_Identity=34.3891402714932, Blast_Score=239, Evalue=4e-63,
Organism=Homo sapiens, GI18426904, Length=442, Percent_Identity=31.447963800905, Blast_Score=197, Evalue=1e-50,
Organism=Escherichia coli, GI1787119, Length=410, Percent_Identity=40.2439024390244, Blast_Score=285, Evalue=4e-78,
Organism=Saccharomyces cerevisiae, GI6324111, Length=420, Percent_Identity=32.8571428571429, Blast_Score=214, Evalue=2e-56,
Organism=Saccharomyces cerevisiae, GI6324039, Length=322, Percent_Identity=25.776397515528, Blast_Score=70, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 46345; Mature: 46345

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPLAFRMRPTKIEEVLGQDHLVGEGKIIHRMVQAKHLSSMILYGPPGIGKTSIATAIAG
CCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHCC
STSIAFRKLNAVINNKKDMEAIAAEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMII
CHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCEECHHHCCCEEE
MIGATTANPYHAINPAIRSRTQIFELHPLDPEQIKTAIKRALEDKHRGLGSYDVAVDDEA
EEEECCCCCCHHCCHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEECHHH
LDHLARGCGGDVRSALNALELAVLSTKENSEGAIRITLEIAEECLQKKSFVHDKDGDAHY
HHHHHHCCCHHHHHHHHHHHHHHEECCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCHHH
DVISAFQKSIRGSDVNAALHYMARLIEAGDLESLARRLLVIAYEDVGLASPQAGGRTLQA
HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHEEEEECCCCCCCCCCCCHHHHH
IQTAERIGFPEARIPLANAVIELCLSPKSNSAILAVDEALSDVRSGKIGDVPNHLKDAHY
HHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHCCCCCCCCHHHHHHCC
KGAAELGRGVEYKYPHDYENGWVKQQYLPDPLKNKVYYQPKQTGKFELALKQVYDKLMKQ
CCHHHHCCCCCCCCCCCCCCCCEEHHCCCCHHHCCEEECCCCCCHHHHHHHHHHHHHHHC
K
C
>Mature Secondary Structure
MKPLAFRMRPTKIEEVLGQDHLVGEGKIIHRMVQAKHLSSMILYGPPGIGKTSIATAIAG
CCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHCC
STSIAFRKLNAVINNKKDMEAIAAEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMII
CHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCEECHHHCCCEEE
MIGATTANPYHAINPAIRSRTQIFELHPLDPEQIKTAIKRALEDKHRGLGSYDVAVDDEA
EEEECCCCCCHHCCHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEECHHH
LDHLARGCGGDVRSALNALELAVLSTKENSEGAIRITLEIAEECLQKKSFVHDKDGDAHY
HHHHHHCCCHHHHHHHHHHHHHHEECCCCCCCEEEEEHHHHHHHHHHHHCCCCCCCCHHH
DVISAFQKSIRGSDVNAALHYMARLIEAGDLESLARRLLVIAYEDVGLASPQAGGRTLQA
HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHEEEEECCCCCCCCCCCCHHHHH
IQTAERIGFPEARIPLANAVIELCLSPKSNSAILAVDEALSDVRSGKIGDVPNHLKDAHY
HHHHHHCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHCCCCCCCCHHHHHHCC
KGAAELGRGVEYKYPHDYENGWVKQQYLPDPLKNKVYYQPKQTGKFELALKQVYDKLMKQ
CCHHHHCCCCCCCCCCCCCCCCEEHHCCCCHHHCCEEECCCCCCHHHHHHHHHHHHHHHC
K
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]