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The map label for this gene is ypmQ [H]

Identifier: 52786056

GI number: 52786056

Start: 2263916

End: 2264497

Strand: Reverse

Name: ypmQ [H]

Synonym: BLi02312

Alternate gene names: 52786056

Gene position: 2264497-2263916 (Counterclockwise)

Preceding gene: 52786057

Following gene: 52786055

Centisome position: 53.63

GC content: 41.75

Gene sequence:

>582_bases
TTGAAAAACGTTTTTGGCATTTTCCTTGCAGGTATTCTCACAGTGTTTCTTTCGTCCTGCGGAACTAGCAAGATTGATAA
TCCTTTGAACTATGATGTACAGTCTTTTTCTTTTCAAAATCAAGACGGGAAAGCGGTGACTCTTGAAAGTTTAAAAGGCC
AGGTGTGGGTGGCTGACTTTATATTTACGAACTGTGAAACGATCTGTCCGCCGATGACTTCACATATGGCTGAACTGCAA
AAACAAATGGAAGAGGAAAACCTGCAGGCCCGCATCGTCTCATTCAGCGTTGATCCCGAAAATGATACGCCTGAAAAATT
GAAGAAATTTGCGGCCAACTACCCGCTCAGTTTTCAAAATTGGGACTTTTTAACCGGATACTCGCAGGAAGAAATCGAAA
AGTTTGCGCTGAAAAGCTTTAAATCAATCGTGAAAAAACCTGAAGATGAGGATCAGGTGATTCACCAATCGTCATTTTAT
CTAGTCGATCAAAACGGCAAAGTCGTCAAGGATTATGACGGTGCAAGAAATACGCCGTACGATGAAATCATCGCCGATAT
TAAGACGCTGGAAAACCGTTGA

Upstream 100 bases:

>100_bases
ATATTGATATTGACTACACCACACCGATTATCTCGGTTCATACCGGAAAAGGAGCGATCGGTTTTACCTTTTACACCGAT
TGAAAAAGGGGATGGAAGGA

Downstream 100 bases:

>100_bases
TAAAAACGGGCGACCTGCCGCTAAAGCCTGTTTCCTGAACACCGGAAAACAGGCTTTTTTTTACATCGGCCAAATGATTT
TCAAAAGAATCAAAACATGG

Product: YpmQ

Products: Acceptor; H2O; oxidized thioredoxin [C]

Alternate protein names: BsSco [H]

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MKNVFGIFLAGILTVFLSSCGTSKIDNPLNYDVQSFSFQNQDGKAVTLESLKGQVWVADFIFTNCETICPPMTSHMAELQ
KQMEEENLQARIVSFSVDPENDTPEKLKKFAANYPLSFQNWDFLTGYSQEEIEKFALKSFKSIVKKPEDEDQVIHQSSFY
LVDQNGKVVKDYDGARNTPYDEIIADIKTLENR

Sequences:

>Translated_193_residues
MKNVFGIFLAGILTVFLSSCGTSKIDNPLNYDVQSFSFQNQDGKAVTLESLKGQVWVADFIFTNCETICPPMTSHMAELQ
KQMEEENLQARIVSFSVDPENDTPEKLKKFAANYPLSFQNWDFLTGYSQEEIEKFALKSFKSIVKKPEDEDQVIHQSSFY
LVDQNGKVVKDYDGARNTPYDEIIADIKTLENR
>Mature_193_residues
MKNVFGIFLAGILTVFLSSCGTSKIDNPLNYDVQSFSFQNQDGKAVTLESLKGQVWVADFIFTNCETICPPMTSHMAELQ
KQMEEENLQARIVSFSVDPENDTPEKLKKFAANYPLSFQNWDFLTGYSQEEIEKFALKSFKSIVKKPEDEDQVIHQSSFY
LVDQNGKVVKDYDGARNTPYDEIIADIKTLENR

Specific function: Neccessary for insertion of copper into the active site of cytochrome c oxidase. May play a role in copper homeostasis or redox signaling [H]

COG id: COG1999

COG function: function code R; Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems

Gene ontology:

Cell location: Cell membrane; Lipid-anchor; Cytoplasmic side [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

None

Paralogues:

None

Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003782
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF02630 SCO1-SenC [H]

EC number: NA

Molecular weight: Translated: 22005; Mature: 22005

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNVFGIFLAGILTVFLSSCGTSKIDNPLNYDVQSFSFQNQDGKAVTLESLKGQVWVADF
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCEECCCCCCEEEHCCCCCCEEEHHH
IFTNCETICPPMTSHMAELQKQMEEENLQARIVSFSVDPENDTPEKLKKFAANYPLSFQN
HHHCCHHCCCCHHHHHHHHHHHHHHHCHHEEEEEEEECCCCCCHHHHHHHHHCCCCCCCC
WDFLTGYSQEEIEKFALKSFKSIVKKPEDEDQVIHQSSFYLVDQNGKVVKDYDGARNTPY
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEECCCCCEEECCCCCCCCCH
DEIIADIKTLENR
HHHHHHHHHHCCC
>Mature Secondary Structure
MKNVFGIFLAGILTVFLSSCGTSKIDNPLNYDVQSFSFQNQDGKAVTLESLKGQVWVADF
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCEECCCCCCEEEHCCCCCCEEEHHH
IFTNCETICPPMTSHMAELQKQMEEENLQARIVSFSVDPENDTPEKLKKFAANYPLSFQN
HHHCCHHCCCCHHHHHHHHHHHHHHHCHHEEEEEEEECCCCCCHHHHHHHHHCCCCCCCC
WDFLTGYSQEEIEKFALKSFKSIVKKPEDEDQVIHQSSFYLVDQNGKVVKDYDGARNTPY
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCEEEECCCCCEEECCCCCCCCCH
DEIIADIKTLENR
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: reduced acceptor; H2O2; reduced thioredoxin [C]

Specific reaction: reduced acceptor + H2O2 = Acceptor + H2O reduced thioredoxin + H2O2 = oxidized thioredoxin + H2O [C]

General reaction: Oxidoreductases; Acting on a peroxide as acceptor; Peroxidase [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]