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The map label for this gene is ypmR [H]

Identifier: 52786055

GI number: 52786055

Start: 2263021

End: 2263773

Strand: Reverse

Name: ypmR [H]

Synonym: BLi02311

Alternate gene names: 52786055

Gene position: 2263773-2263021 (Counterclockwise)

Preceding gene: 52786056

Following gene: 52786054

Centisome position: 53.61

GC content: 45.29

Gene sequence:

>753_bases
TTGAACATACGTTTTATTACAGTCATGATGGCCCTCGTCTGTCTGCTTTCAGCCTGTACGGAGTGGAATGCGGGTGTTGA
AAAAACATCGGTCTCCCCTAAGCGCGATATCGTGATTGCAGCGGTGGGCGATTCTCTGACAGAGGGGGTAGGCGATCAAG
AAAAGAAAGGCTATGTCGGCATGGTGGCCGATGAGCTTGAAAGCCGGAGCGATGTGAAGTCCGTAACGGTCAAAAATTAT
GCCGTTAAAGGCTCCCGGACTGATCAGCTGCTTGAAAGATTAAAAGACAAAGAAGTACAAGAGGGCCTGAAAGATGCAGA
CTACATTTTGTTTACAATCGGGGGCAACGACCTGATGAAAGTCGTCCGCCAAAACTTCGCGCACTTAACGCTCACACCTT
TCCGTGCTGAACAAAAACTGTTTGAAAAGCGGTTTTCGAATATTTTAGCGGAAATCAGAGAGCAAAACGCCAGCGCTGAA
TTGATTTATGTCAGCATGTATAATCCGTTTAAGTTTACGCTGTCTGAACTGCGGGAAGTTGACCAAGTCGTAGACGAATG
GAATGAAGGCGCGGAAAAAAGGCTGAAGAAGGTCTCCAACACGAAAATGGCGGATATCGCTGATATTTTTGAGGAATACA
GCGATGAAAAGAAGATTGCAGAAGACGAGTTTCATCCTAATCAATACGGGTATTCTTTAATAGCGAAACGCGTTTACGAA
CAAATTAAAAACGAAGACCTCCCAGCAGAATAA

Upstream 100 bases:

>100_bases
CGGAAAACAGGCTTTTTTTTACATCGGCCAAATGATTTTCAAAAGAATCAAAACATGGTACACTTTTTTTTAGGTTATCA
AGAAGGAAGGGGCATCATTA

Downstream 100 bases:

>100_bases
GGTGAAAAAAATGAAGAAATGGAAGAGCTTATTTTTAATTTTAGCAGCAGTCAACGTCATGATACTTGCCGGGATTTTCA
TTCTCATTTCCCTGCCCGGC

Product: YpmR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MNIRFITVMMALVCLLSACTEWNAGVEKTSVSPKRDIVIAAVGDSLTEGVGDQEKKGYVGMVADELESRSDVKSVTVKNY
AVKGSRTDQLLERLKDKEVQEGLKDADYILFTIGGNDLMKVVRQNFAHLTLTPFRAEQKLFEKRFSNILAEIREQNASAE
LIYVSMYNPFKFTLSELREVDQVVDEWNEGAEKRLKKVSNTKMADIADIFEEYSDEKKIAEDEFHPNQYGYSLIAKRVYE
QIKNEDLPAE

Sequences:

>Translated_250_residues
MNIRFITVMMALVCLLSACTEWNAGVEKTSVSPKRDIVIAAVGDSLTEGVGDQEKKGYVGMVADELESRSDVKSVTVKNY
AVKGSRTDQLLERLKDKEVQEGLKDADYILFTIGGNDLMKVVRQNFAHLTLTPFRAEQKLFEKRFSNILAEIREQNASAE
LIYVSMYNPFKFTLSELREVDQVVDEWNEGAEKRLKKVSNTKMADIADIFEEYSDEKKIAEDEFHPNQYGYSLIAKRVYE
QIKNEDLPAE
>Mature_250_residues
MNIRFITVMMALVCLLSACTEWNAGVEKTSVSPKRDIVIAAVGDSLTEGVGDQEKKGYVGMVADELESRSDVKSVTVKNY
AVKGSRTDQLLERLKDKEVQEGLKDADYILFTIGGNDLMKVVRQNFAHLTLTPFRAEQKLFEKRFSNILAEIREQNASAE
LIYVSMYNPFKFTLSELREVDQVVDEWNEGAEKRLKKVSNTKMADIADIFEEYSDEKKIAEDEFHPNQYGYSLIAKRVYE
QIKNEDLPAE

Specific function: Unknown

COG id: COG2755

COG function: function code E; Lysophospholipase L1 and related esterases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013830
- InterPro:   IPR013831
- InterPro:   IPR001087 [H]

Pfam domain/function: PF00657 Lipase_GDSL [H]

EC number: NA

Molecular weight: Translated: 28470; Mature: 28470

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIRFITVMMALVCLLSACTEWNAGVEKTSVSPKRDIVIAAVGDSLTEGVGDQEKKGYVG
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHCCCCCCCCCCHH
MVADELESRSDVKSVTVKNYAVKGSRTDQLLERLKDKEVQEGLKDADYILFTIGGNDLMK
HHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHH
VVRQNFAHLTLTPFRAEQKLFEKRFSNILAEIREQNASAELIYVSMYNPFKFTLSELREV
HHHHHHHHEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHH
DQVVDEWNEGAEKRLKKVSNTKMADIADIFEEYSDEKKIAEDEFHPNQYGYSLIAKRVYE
HHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHH
QIKNEDLPAE
HHCCCCCCCC
>Mature Secondary Structure
MNIRFITVMMALVCLLSACTEWNAGVEKTSVSPKRDIVIAAVGDSLTEGVGDQEKKGYVG
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCHHHHCCCCCCCCCCHH
MVADELESRSDVKSVTVKNYAVKGSRTDQLLERLKDKEVQEGLKDADYILFTIGGNDLMK
HHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHH
VVRQNFAHLTLTPFRAEQKLFEKRFSNILAEIREQNASAELIYVSMYNPFKFTLSELREV
HHHHHHHHEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHH
DQVVDEWNEGAEKRLKKVSNTKMADIADIFEEYSDEKKIAEDEFHPNQYGYSLIAKRVYE
HHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHH
QIKNEDLPAE
HHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 3145906 [H]