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The map label for this gene is yhcK [H]

Identifier: 52786050

GI number: 52786050

Start: 2258756

End: 2259844

Strand: Reverse

Name: yhcK [H]

Synonym: BLi02306

Alternate gene names: 52786050

Gene position: 2259844-2258756 (Counterclockwise)

Preceding gene: 52786051

Following gene: 52786047

Centisome position: 53.52

GC content: 39.49

Gene sequence:

>1089_bases
ATGTTTTTAATCGATTTATTTTTGAATTTGTGCATTTTAATTACTTCGCTCTTTATTTACACTCAGCTAAAGTGGAATAT
TTTTTCCCGAAAAGCTACAAACAAACAACTTGATTGGATTGACGGCATTCTTGGCGGGGTGCTCGGAAATGTGCTTATGT
TCTTTTCGATCCAGGCAACCGATGAGACGATCGTCGACTTGCGTTATGTCCCCGTCATGATTTTGTTTTTATTTACGGGC
GCCTTTCCGGCCTTTATCTGTTCTCTGCTGATTATAGGAGGAAGGTTTGTTTACGGGACGAATACATCCTCGATTGCAGC
GCTTATAGGTATGATCGTGATATTCGCAGGATATTATCTCATTCTTCGGATCATGGATAAAGACGCCGGCACTTATCGAA
AGACATTTGCATTAGTTATTTTTGCCAATGTGGCGATTTCAATTGTGATCTTGATGATCCTTCATGATTTCTTCTTAATG
AAAATGTTATTGACGTGGTTCTGGATTTTATCTACTATCGGCGGCTTTACGTCAGTATACATCGTCTCATATTTAAGAAA
ATCTCATTTTCTGTTAAAAAAGTATGAAGAGGAATCGTCGATTGATTATTTAACGGGATTGAATAATGTCCGGCAATTTG
ATGCGATATGGAATGCTCATATTTCAAACGCAAAAGAGAAGAACGAGAAACTGTCTTTGCTTTTGATCGATATCGATTAT
TTCAAAACGATTAATGATACGTACGGACATTCAAATGGAGATGCGATTTTAAAAGAATTAGGAACGATTTTAAAAAAGTC
TGCCCGATCGGAAGATATCGTATCAAGAAACGGCGGAGAAGAGTTTTCGGTCATATTGCCGAACTGTTCCCATTCGCAGG
CTGCAGAGATTGCTGAGAGGGTGCGCAAGGAAGTGGAGACACACACTTTTTTCATTTCTCATTCAAAAAAGATTCATATT
ACGGTTTCGATTGGAGTTGCGGCATTTCCGGAGGTGATTCACAGTACGGGAGAGCTGATTGAAAAAGCCGATCAATGTTT
GTACAGGGCTAAACACCTTGGGAGAAACAGAGTGTGCACCTCCGTTTGA

Upstream 100 bases:

>100_bases
ATCCCGCCGGGCGTCTGAAGAAAGGAACAAAAATGCTTTTAACGTCTTAATAATTGACGATATATACAATATAAAATGAG
TTTGGCGCTGGGGGCTTGTC

Downstream 100 bases:

>100_bases
ACTCGCATTCAGCTGAATGAAAAAGGATAGATGAAACGAGGTTCATCTATCCTGTCTTTTTTATGTTCGTTTATCGAATT
CAGCAAGTTTGATAAAAGTC

Product: YhcK

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MFLIDLFLNLCILITSLFIYTQLKWNIFSRKATNKQLDWIDGILGGVLGNVLMFFSIQATDETIVDLRYVPVMILFLFTG
AFPAFICSLLIIGGRFVYGTNTSSIAALIGMIVIFAGYYLILRIMDKDAGTYRKTFALVIFANVAISIVILMILHDFFLM
KMLLTWFWILSTIGGFTSVYIVSYLRKSHFLLKKYEEESSIDYLTGLNNVRQFDAIWNAHISNAKEKNEKLSLLLIDIDY
FKTINDTYGHSNGDAILKELGTILKKSARSEDIVSRNGGEEFSVILPNCSHSQAAEIAERVRKEVETHTFFISHSKKIHI
TVSIGVAAFPEVIHSTGELIEKADQCLYRAKHLGRNRVCTSV

Sequences:

>Translated_362_residues
MFLIDLFLNLCILITSLFIYTQLKWNIFSRKATNKQLDWIDGILGGVLGNVLMFFSIQATDETIVDLRYVPVMILFLFTG
AFPAFICSLLIIGGRFVYGTNTSSIAALIGMIVIFAGYYLILRIMDKDAGTYRKTFALVIFANVAISIVILMILHDFFLM
KMLLTWFWILSTIGGFTSVYIVSYLRKSHFLLKKYEEESSIDYLTGLNNVRQFDAIWNAHISNAKEKNEKLSLLLIDIDY
FKTINDTYGHSNGDAILKELGTILKKSARSEDIVSRNGGEEFSVILPNCSHSQAAEIAERVRKEVETHTFFISHSKKIHI
TVSIGVAAFPEVIHSTGELIEKADQCLYRAKHLGRNRVCTSV
>Mature_362_residues
MFLIDLFLNLCILITSLFIYTQLKWNIFSRKATNKQLDWIDGILGGVLGNVLMFFSIQATDETIVDLRYVPVMILFLFTG
AFPAFICSLLIIGGRFVYGTNTSSIAALIGMIVIFAGYYLILRIMDKDAGTYRKTFALVIFANVAISIVILMILHDFFLM
KMLLTWFWILSTIGGFTSVYIVSYLRKSHFLLKKYEEESSIDYLTGLNNVRQFDAIWNAHISNAKEKNEKLSLLLIDIDY
FKTINDTYGHSNGDAILKELGTILKKSARSEDIVSRNGGEEFSVILPNCSHSQAAEIAERVRKEVETHTFFISHSKKIHI
TVSIGVAAFPEVIHSTGELIEKADQCLYRAKHLGRNRVCTSV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI1787802, Length=174, Percent_Identity=36.2068965517241, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI87082007, Length=215, Percent_Identity=33.4883720930233, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI145693134, Length=162, Percent_Identity=40.7407407407407, Blast_Score=111, Evalue=7e-26,
Organism=Escherichia coli, GI1788381, Length=191, Percent_Identity=31.9371727748691, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI87081881, Length=182, Percent_Identity=42.3076923076923, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1786584, Length=166, Percent_Identity=33.7349397590361, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1787816, Length=161, Percent_Identity=40.9937888198758, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1787262, Length=139, Percent_Identity=36.6906474820144, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1788085, Length=190, Percent_Identity=31.5789473684211, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1787541, Length=163, Percent_Identity=29.4478527607362, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87081974, Length=191, Percent_Identity=27.2251308900524, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1788956, Length=153, Percent_Identity=33.9869281045752, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI87081977, Length=188, Percent_Identity=26.5957446808511, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 40963; Mature: 40963

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLIDLFLNLCILITSLFIYTQLKWNIFSRKATNKQLDWIDGILGGVLGNVLMFFSIQAT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEECC
DETIVDLRYVPVMILFLFTGAFPAFICSLLIIGGRFVYGTNTSSIAALIGMIVIFAGYYL
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHH
ILRIMDKDAGTYRKTFALVIFANVAISIVILMILHDFFLMKMLLTWFWILSTIGGFTSVY
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVSYLRKSHFLLKKYEEESSIDYLTGLNNVRQFDAIWNAHISNAKEKNEKLSLLLIDIDY
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCEEEEEEEHHH
FKTINDTYGHSNGDAILKELGTILKKSARSEDIVSRNGGEEFSVILPNCSHSQAAEIAER
HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
VRKEVETHTFFISHSKKIHITVSIGVAAFPEVIHSTGELIEKADQCLYRAKHLGRNRVCT
HHHHHHHHEEEEECCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SV
CC
>Mature Secondary Structure
MFLIDLFLNLCILITSLFIYTQLKWNIFSRKATNKQLDWIDGILGGVLGNVLMFFSIQAT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEECC
DETIVDLRYVPVMILFLFTGAFPAFICSLLIIGGRFVYGTNTSSIAALIGMIVIFAGYYL
CCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHH
ILRIMDKDAGTYRKTFALVIFANVAISIVILMILHDFFLMKMLLTWFWILSTIGGFTSVY
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVSYLRKSHFLLKKYEEESSIDYLTGLNNVRQFDAIWNAHISNAKEKNEKLSLLLIDIDY
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCEEEEEEEHHH
FKTINDTYGHSNGDAILKELGTILKKSARSEDIVSRNGGEEFSVILPNCSHSQAAEIAER
HHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
VRKEVETHTFFISHSKKIHITVSIGVAAFPEVIHSTGELIEKADQCLYRAKHLGRNRVCT
HHHHHHHHEEEEECCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SV
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]