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The map label for this gene is yodR [H]

Identifier: 52786041

GI number: 52786041

Start: 2251279

End: 2251932

Strand: Reverse

Name: yodR [H]

Synonym: BLi02297

Alternate gene names: 52786041

Gene position: 2251932-2251279 (Counterclockwise)

Preceding gene: 52786042

Following gene: 52786040

Centisome position: 53.33

GC content: 50.92

Gene sequence:

>654_bases
ATGGGTTTGGGAGTCATAGAGCGGGAGAGAATCGCGAAACGGGCGGCCCGCGAAATCAAAAGCGGAATGATTGTCAATCT
GGGCATTGGCATTCCGTCTTTAGTTCCCAACTTTTTAGACCCGGGCACTTCCGTAATGATCCAATCTGAAAACGGGCTTC
TCGGCATCGGCGGATCGCCTGAAAAAGGAAAGGAAGATGAGAATCTTTGCAATGCGGCAGGCTGGCCTGTCACCGTAGTA
AAAGGCGCTTCTTATTTTGATTCAGCTCTGTCGTTCGGCATGATCAGAAAGGGTGCGATTGATGTCACCATTCTTGGTTC
TCTGCAGGTCAGCCAGTCAGGAGATCTGGCCAACTGGATCGTCCCAGGCAAAAAGGTTCCTGGAATGGGAGGGGCGATGG
AGCTTGCCCAAAAGGCGAAAAAAGTCATTGTCGTGATGAGCCATACCGATAAAAACGGTGCACCCAAACTTGTCGCTGAC
TGTACTCTGCCGCTGACAGCAAAAGGCTGCGTCGACATGGTAATTACAGAAAAAGCCGTGATCACCATTGACAGCGGCGG
TTTTGTATTACAAGAGCTGATGAATGAAGAGGATCTTGATGATGTGCTGCGGCTGACGGAGGGAAAGATCCGGATCGACG
GGCCGCTTTCGTAA

Upstream 100 bases:

>100_bases
TCGAGCGGATCGTTCCCATTGGAGAGCTCGATGAAGAAGAAATTGTAACACCCGGTGTTTTTGTCGAAGGTGTAGCTGAA
ACGGAAGGGGTGAACTGGAA

Downstream 100 bases:

>100_bases
GAGGAGGAATTGGATGGAGAACATAGAGAGAAAAGTGTGCGATTGGATCGATTCGCATGAGCAAAAAGCGATTCGCCTTT
TGAAAAAACTCGTCGGAGAA

Product: YodR

Products: Acetate; Butanoyl-CoA [C]

Alternate protein names: Probable CoA-transferase subunit beta [H]

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MGLGVIERERIAKRAAREIKSGMIVNLGIGIPSLVPNFLDPGTSVMIQSENGLLGIGGSPEKGKEDENLCNAAGWPVTVV
KGASYFDSALSFGMIRKGAIDVTILGSLQVSQSGDLANWIVPGKKVPGMGGAMELAQKAKKVIVVMSHTDKNGAPKLVAD
CTLPLTAKGCVDMVITEKAVITIDSGGFVLQELMNEEDLDDVLRLTEGKIRIDGPLS

Sequences:

>Translated_217_residues
MGLGVIERERIAKRAAREIKSGMIVNLGIGIPSLVPNFLDPGTSVMIQSENGLLGIGGSPEKGKEDENLCNAAGWPVTVV
KGASYFDSALSFGMIRKGAIDVTILGSLQVSQSGDLANWIVPGKKVPGMGGAMELAQKAKKVIVVMSHTDKNGAPKLVAD
CTLPLTAKGCVDMVITEKAVITIDSGGFVLQELMNEEDLDDVLRLTEGKIRIDGPLS
>Mature_216_residues
GLGVIERERIAKRAAREIKSGMIVNLGIGIPSLVPNFLDPGTSVMIQSENGLLGIGGSPEKGKEDENLCNAAGWPVTVVK
GASYFDSALSFGMIRKGAIDVTILGSLQVSQSGDLANWIVPGKKVPGMGGAMELAQKAKKVIVVMSHTDKNGAPKLVADC
TLPLTAKGCVDMVITEKAVITIDSGGFVLQELMNEEDLDDVLRLTEGKIRIDGPLS

Specific function: SHORT-CHAIN FATTY ACIDS METABOLISM. [C]

COG id: COG2057

COG function: function code I; Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 3-oxoacid CoA-transferase subunit B family [H]

Homologues:

Organism=Homo sapiens, GI4557817, Length=201, Percent_Identity=53.2338308457711, Blast_Score=206, Evalue=1e-53,
Organism=Homo sapiens, GI11545841, Length=201, Percent_Identity=49.2537313432836, Blast_Score=192, Evalue=2e-49,
Organism=Escherichia coli, GI1788552, Length=210, Percent_Identity=46.1904761904762, Blast_Score=192, Evalue=2e-50,
Organism=Caenorhabditis elegans, GI17531517, Length=208, Percent_Identity=50.9615384615385, Blast_Score=205, Evalue=1e-53,
Organism=Drosophila melanogaster, GI24655794, Length=207, Percent_Identity=52.6570048309179, Blast_Score=212, Evalue=1e-55,
Organism=Drosophila melanogaster, GI21358325, Length=207, Percent_Identity=52.6570048309179, Blast_Score=212, Evalue=1e-55,

Paralogues:

None

Copy number: 369 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012791
- InterPro:   IPR004165 [H]

Pfam domain/function: PF01144 CoA_trans [H]

EC number: 2.8.3.8 [C]

Molecular weight: Translated: 22816; Mature: 22685

Theoretical pI: Translated: 5.09; Mature: 5.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLGVIERERIAKRAAREIKSGMIVNLGIGIPSLVPNFLDPGTSVMIQSENGLLGIGGSP
CCCCCHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHCCCCCEEEEECCCCEEEECCCC
EKGKEDENLCNAAGWPVTVVKGASYFDSALSFGMIRKGAIDVTILGSLQVSQSGDLANWI
CCCCCCHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCEEEEE
VPGKKVPGMGGAMELAQKAKKVIVVMSHTDKNGAPKLVADCTLPLTAKGCVDMVITEKAV
CCCCCCCCCCHHHHHHHHCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCEEEEEECEEE
ITIDSGGFVLQELMNEEDLDDVLRLTEGKIRIDGPLS
EEECCCCHHHHHHCCCCCHHHHHHHCCCEEEECCCCC
>Mature Secondary Structure 
GLGVIERERIAKRAAREIKSGMIVNLGIGIPSLVPNFLDPGTSVMIQSENGLLGIGGSP
CCCCHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHCCCCCEEEEECCCCEEEECCCC
EKGKEDENLCNAAGWPVTVVKGASYFDSALSFGMIRKGAIDVTILGSLQVSQSGDLANWI
CCCCCCHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCEEEEE
VPGKKVPGMGGAMELAQKAKKVIVVMSHTDKNGAPKLVADCTLPLTAKGCVDMVITEKAV
CCCCCCCCCCHHHHHHHHCCEEEEEEEECCCCCCCCEEEECCCCCCCCCCEEEEEECEEE
ITIDSGGFVLQELMNEEDLDDVLRLTEGKIRIDGPLS
EEECCCCHHHHHHCCCCCHHHHHHHCCCEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Acetyl-CoA; Butyrate [C]

Specific reaction: Acetyl-CoA + Butyrate (n-C4:0) --> Acetate + Butanoyl-CoA [C]

General reaction: Coenzyme A transfer [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]