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The map label for this gene is yodB [H]

Identifier: 52786018

GI number: 52786018

Start: 2233004

End: 2233312

Strand: Reverse

Name: yodB [H]

Synonym: BLi02274

Alternate gene names: 52786018

Gene position: 2233312-2233004 (Counterclockwise)

Preceding gene: 52786020

Following gene: 52786017

Centisome position: 52.89

GC content: 46.93

Gene sequence:

>309_bases
ATGTGTCCTAGAATGGAAGCCGCCTTTTCTTTACTCGGCAAACGATGGAATGGACTGATCATCCATGTATTATTGGATGG
ACCTAAACGATTTAAAGACTTGACTGAAATGATACCGATGATCAGCCAGAAAATGCTGGCTGAACGTTTAAAAGAGCTCG
AACACTGCAAAATAGTCGAGCGTCAAGTGCTCCCGGAAACGCCGGTAAAAGTGATCTATCAATTGACAGACAAGGGAACG
GCGCTGGAGCCTGTCCTCAAGGAGATACAAACCTGGGCCGAAAGCCATTGTGATCCGGAAGGGAGCTGA

Upstream 100 bases:

>100_bases
AAAGTTAGAAACTTACTTTTTGTAACTTTAATGAGTATTTTAATGGCACACATTATATTTGTCAACTGGATATGGAGGGG
TGAGAGAATTGGGGTTTACA

Downstream 100 bases:

>100_bases
CCGGATTGAACAGTAAAGAAACTGTCGTCATTACAGGCGGGGCAAAAGGCATTGGAAGAGACCTCGTGGCCGCCTATGCT
CAAAAAGGTTTTATCGTCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 102; Mature: 102

Protein sequence:

>102_residues
MCPRMEAAFSLLGKRWNGLIIHVLLDGPKRFKDLTEMIPMISQKMLAERLKELEHCKIVERQVLPETPVKVIYQLTDKGT
ALEPVLKEIQTWAESHCDPEGS

Sequences:

>Translated_102_residues
MCPRMEAAFSLLGKRWNGLIIHVLLDGPKRFKDLTEMIPMISQKMLAERLKELEHCKIVERQVLPETPVKVIYQLTDKGT
ALEPVLKEIQTWAESHCDPEGS
>Mature_102_residues
MCPRMEAAFSLLGKRWNGLIIHVLLDGPKRFKDLTEMIPMISQKMLAERLKELEHCKIVERQVLPETPVKVIYQLTDKGT
ALEPVLKEIQTWAESHCDPEGS

Specific function: Negatively regulates yodC and azoR1 which may contribute to the degradation of aromatic compounds. Probably positively regulates the catechol-specific transcription of mhqNOP, mhqED, and mhqA [H]

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 11699; Mature: 11699

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCPRMEAAFSLLGKRWNGLIIHVLLDGPKRFKDLTEMIPMISQKMLAERLKELEHCKIVE
CCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQVLPETPVKVIYQLTDKGTALEPVLKEIQTWAESHCDPEGS
HHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MCPRMEAAFSLLGKRWNGLIIHVLLDGPKRFKDLTEMIPMISQKMLAERLKELEHCKIVE
CCCHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQVLPETPVKVIYQLTDKGTALEPVLKEIQTWAESHCDPEGS
HHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]