Click here to switch to the map view.

The map label for this gene is yodD [H]

Identifier: 52786020

GI number: 52786020

Start: 2234124

End: 2234729

Strand: Reverse

Name: yodD [H]

Synonym: BLi02276

Alternate gene names: 52786020

Gene position: 2234729-2234124 (Counterclockwise)

Preceding gene: 52786025

Following gene: 52786018

Centisome position: 52.92

GC content: 49.17

Gene sequence:

>606_bases
ATGAATTATATATATGAAAAAGGGGACTCTGATCTCACCCTGTTGTTATTGCATGGAACAGGGGGAAACGAACACGATCT
TCTGCCGATCGGCAAGATGATTGATCCCGATGCAAATTTGCTCGGGGTCAGGGGAAATGTGCTGGAAAACGGAATGCCCC
GTTTTTTCAGGCGGCTGAGAGAAGGGGTGTTTGACGAAAAAGATTTGATCGAACGGACGGATGAATTAAAAACGTTTCTA
GATGAAGCAGCCAAGGAACTTCACTTTGACAGAAGCCGGGTGGTCGCAATCGGCTATTCAAACGGCGCCAATATCGCGGG
AAGTCTGCTGTTCCGTCATGAACATGTACTGAAAGGGGCGATTTTGCATCATCCGATGGTTCCGTTTAGAAATCGCAAGC
TCCCTGATATGACAGGTCTGCCCGTGTTTATCGGGGCCGGCAAAACAGATCCGCTCTGTCCGCCGCAGGAATCAAGCGAG
CTTGCCGGCTATTTCACAAACGCCGGCGCCAAAGTGCTCCTTCACTGGGAAGGCGGAGGCCATCAGCTGACACACGGCGA
AATTGAAAAGGCGAAAATCTGGTATGAAAAGCATATAAAAGCATAA

Upstream 100 bases:

>100_bases
ATGAACAGTTGGAGAGTCTCTTTCGGTGAATTGAAGCTTTCCGAAATGATTGCAGGCCAATTGAAGGCATACTTCCAAAA
TGGAAAAGGAGTGAAAGGAA

Downstream 100 bases:

>100_bases
AAATAAACCTTAGTCCTTTTTTGGGACTAAGGTTTTTAACATGTTTACAGCCATGTAGATACGTCAGACACATCGAAACG
ATTGCTTTTGTGCGCAGGTT

Product: YodD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MNYIYEKGDSDLTLLLLHGTGGNEHDLLPIGKMIDPDANLLGVRGNVLENGMPRFFRRLREGVFDEKDLIERTDELKTFL
DEAAKELHFDRSRVVAIGYSNGANIAGSLLFRHEHVLKGAILHHPMVPFRNRKLPDMTGLPVFIGAGKTDPLCPPQESSE
LAGYFTNAGAKVLLHWEGGGHQLTHGEIEKAKIWYEKHIKA

Sequences:

>Translated_201_residues
MNYIYEKGDSDLTLLLLHGTGGNEHDLLPIGKMIDPDANLLGVRGNVLENGMPRFFRRLREGVFDEKDLIERTDELKTFL
DEAAKELHFDRSRVVAIGYSNGANIAGSLLFRHEHVLKGAILHHPMVPFRNRKLPDMTGLPVFIGAGKTDPLCPPQESSE
LAGYFTNAGAKVLLHWEGGGHQLTHGEIEKAKIWYEKHIKA
>Mature_201_residues
MNYIYEKGDSDLTLLLLHGTGGNEHDLLPIGKMIDPDANLLGVRGNVLENGMPRFFRRLREGVFDEKDLIERTDELKTFL
DEAAKELHFDRSRVVAIGYSNGANIAGSLLFRHEHVLKGAILHHPMVPFRNRKLPDMTGLPVFIGAGKTDPLCPPQESSE
LAGYFTNAGAKVLLHWEGGGHQLTHGEIEKAKIWYEKHIKA

Specific function: Putative hydrolase that may contribute to the degradation of aromatic compounds (Potential) [H]

COG id: COG0400

COG function: function code R; Predicted esterase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AB hydrolase 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003140 [H]

Pfam domain/function: PF02230 Abhydrolase_2 [H]

EC number: NA

Molecular weight: Translated: 22474; Mature: 22474

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYIYEKGDSDLTLLLLHGTGGNEHDLLPIGKMIDPDANLLGVRGNVLENGMPRFFRRLR
CCCCCCCCCCCEEEEEEECCCCCCCCCEECCCEECCCCCEEECCCCHHHCCHHHHHHHHH
EGVFDEKDLIERTDELKTFLDEAAKELHFDRSRVVAIGYSNGANIAGSLLFRHEHVLKGA
HCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
ILHHPMVPFRNRKLPDMTGLPVFIGAGKTDPLCPPQESSELAGYFTNAGAKVLLHWEGGG
HHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHEEECCCEEEEEEEECCC
HQLTHGEIEKAKIWYEKHIKA
CCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MNYIYEKGDSDLTLLLLHGTGGNEHDLLPIGKMIDPDANLLGVRGNVLENGMPRFFRRLR
CCCCCCCCCCCEEEEEEECCCCCCCCCEECCCEECCCCCEEECCCCHHHCCHHHHHHHHH
EGVFDEKDLIERTDELKTFLDEAAKELHFDRSRVVAIGYSNGANIAGSLLFRHEHVLKGA
HCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHH
ILHHPMVPFRNRKLPDMTGLPVFIGAGKTDPLCPPQESSELAGYFTNAGAKVLLHWEGGG
HHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHEEECCCEEEEEEEECCC
HQLTHGEIEKAKIWYEKHIKA
CCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9734814; 9384377 [H]