Click here to switch to the map view.

The map label for this gene is ymcA [H]

Identifier: 52785684

GI number: 52785684

Start: 1886885

End: 1887316

Strand: Direct

Name: ymcA [H]

Synonym: BLi01926

Alternate gene names: 52785684

Gene position: 1886885-1887316 (Clockwise)

Preceding gene: 52785683

Following gene: 52785685

Centisome position: 44.68

GC content: 43.98

Gene sequence:

>432_bases
GTGACGCTTTATACGAAAAAAGAGATTGTTGCAAAAGCGCGGGAGCTCGCAAAAATGATTGCAGAAACGGAAGAAGTCGA
CTTTTTCAAAAAAGCGGAGGCACAGATTAATGAGAATGCCAAAATAACGGGCATAATCAACCAAATCAAAGCCCTGCAAA
AGCAAGCCGTCAACTTTAAACATTACGAAAAGCACGAAGCGCTTAAACAAACGGAAGCAAAGATTGACGCGCTTCAGGAA
GAGCTTGACGAGATTCCGATCATTCAAGAGTTCAGAGACTCCCAAATGGAAGTCAACGACCTTCTTCAGCTTGTCGCGCA
TACAATATCAAACCAAGTGACAAACGAGATCATCACATCGACCGGGGGAGACCTGCTGAAAGGCGAGACCGGTTCAAAAG
TGAAAAATTCATCACCGAGCTGTTCTCTATAA

Upstream 100 bases:

>100_bases
AAAGAAGCGATCGGCCAGCTTGTCAACGTGAAAATCCACCAGGCGAAAACTTGGTCGCTTGACGGGGAAATGGTAGGAGA
AGCAATCGAGGTGAAGTAAA

Downstream 100 bases:

>100_bases
TTTGGCGGCGCCTTTTAAGGCGCCGTTTTTTTTGAATTCAATTTCCCGCCGCGACGGCTTATTGAAAAGATTCGTTTTTC
GGCTGTCTTTTTCTTTTCTG

Product: YmcA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 142

Protein sequence:

>143_residues
MTLYTKKEIVAKARELAKMIAETEEVDFFKKAEAQINENAKITGIINQIKALQKQAVNFKHYEKHEALKQTEAKIDALQE
ELDEIPIIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKNSSPSCSL

Sequences:

>Translated_143_residues
MTLYTKKEIVAKARELAKMIAETEEVDFFKKAEAQINENAKITGIINQIKALQKQAVNFKHYEKHEALKQTEAKIDALQE
ELDEIPIIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKNSSPSCSL
>Mature_142_residues
TLYTKKEIVAKARELAKMIAETEEVDFFKKAEAQINENAKITGIINQIKALQKQAVNFKHYEKHEALKQTEAKIDALQEE
LDEIPIIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKNSSPSCSL

Specific function: May work together with ylbF to regulate community development [H]

COG id: COG4550

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016783
- InterPro:   IPR010368 [H]

Pfam domain/function: PF06133 DUF964 [H]

EC number: NA

Molecular weight: Translated: 16031; Mature: 15900

Theoretical pI: Translated: 5.06; Mature: 5.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLYTKKEIVAKARELAKMIAETEEVDFFKKAEAQINENAKITGIINQIKALQKQAVNFK
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHH
HYEKHEALKQTEAKIDALQEELDEIPIIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITS
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
TGGDLLKGETGSKVKNSSPSCSL
CCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TLYTKKEIVAKARELAKMIAETEEVDFFKKAEAQINENAKITGIINQIKALQKQAVNFK
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHH
HYEKHEALKQTEAKIDALQEELDEIPIIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITS
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
TGGDLLKGETGSKVKNSSPSCSL
CCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]