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The map label for this gene is ymfH [H]

Identifier: 52785669

GI number: 52785669

Start: 1871056

End: 1872342

Strand: Direct

Name: ymfH [H]

Synonym: BLi01910

Alternate gene names: 52785669

Gene position: 1871056-1872342 (Clockwise)

Preceding gene: 52785668

Following gene: 52785670

Centisome position: 44.31

GC content: 46.0

Gene sequence:

>1287_bases
TTGACGAAAACGATCGAATTTGAACAGCTGAAGGAAACACTATATTACGAAAAAATGCCTGGCGGCCTCGATGTCTATGT
TCTTCCGAAAGAAGGATTTAACAAGACATATGCGGTCTTTACCACAAAATACGGGTCGATTGACAATCAGTTTGTCCCGC
TCGGAAAAGATGAAATGGTCCGCGTGCCTGATGGAATCGCACACTTTCTCGAACATAAGCTCTTTGAAAAAGAAGACGGC
GACGTTTTTCAGCAATTCAGCAGGCAGGGAGCTTCGGCAAATGCGTTTACCTCCTTCACAAGAACGGCCTACCTGTTTTC
AAGCACGTCAAATGTGGAAGAAAACCTGGAAACGCTCGTCGACTTTGTGCAGGACCCTTACTTTACAGAAAAAACGGTTG
AGAAGGAAAAAGGCATCATCGGACAGGAAATCAACATGTATGACGACAACCCCGACTGGCGCCTGTTTTTCGGCCTGATC
GAAAACATGTATCAAGAGCACCCTGTCCGGATCGATATCGCAGGCACGATCGAAAGCATCTCTCATATTACAAAAGACCT
TTTGTACGAATGCTATGAGACGTTCTATCATCCGAGCAATATGCTGCTGTTTGTCGTCGGTCCGGCCGATCCCGAAGCGA
TCATTCGCCAGGTCCGCGAAAACCAGCAGAAAAAACCGTATACAGACCAGCCTGAAATCGTCCGGAAAGAAGTTAAAGAG
CCTGGGGCCGTATTTAAAAAAGAACAGGAAATTAAAATGAATGTTCAAAGCTCAAAATGCCTCGTCGGTTTAAAAAGCGC
TCATCCGATGAATACGGGAGAAGCCCTGCTGAAGCATGAGCTGACCATCAACCTCATCCTCGAGTGTCTGTTTGGCAAAA
GCTCAAGCGATTACGAAAGAATTTATGAAAAAGGGTATATCGATGAGACATTCAGCTATGACTATACTGAAGAACACGGA
TTTGGCTTCGTCTCTGTCGGCGGAGATACGCCTGAGCCTGACAAGCTGGCCGAAGAGCTCAAACAAGTGCTGTTCAAAGC
GAAAGAAACGATCACAGCCGAAAAGCTGGAACTGGCCAGAAAGAAAAAAATCGGCAATTTCCTGAAATCGATGAATTCGC
CTGAGTACATCGCCAACCAGTTTACACGGTACGCTTTTCTGGAGACGAGTCTGTTTGATATCGTCACCGTACTCGAATCG
ATTACGCTTGATGACGTTCACCGCGTCATTGAGGAAGAAGTTGAGGAAGACAGGATCACCGTCTGCAAAGTCGTTCCAAA
ATCATAA

Upstream 100 bases:

>100_bases
TGGGACGAATCGACAATGTCACAAAAGAAGACATCATCGAAGTCGGAAAGAAAATCGATTTGGATACAACGTACTTTCTC
AAAGGGACGGAGGGAGCATC

Downstream 100 bases:

>100_bases
AGCAAGGTCTGAAAGTTCAGCGTGCAGGGATATTTCCGATGCACGCTGAACCTTTCTTCTTTTTTAACGGAAAGGTGGAA
ATATGGTATGACAAAACTCG

Product: YmfH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 427

Protein sequence:

>428_residues
MTKTIEFEQLKETLYYEKMPGGLDVYVLPKEGFNKTYAVFTTKYGSIDNQFVPLGKDEMVRVPDGIAHFLEHKLFEKEDG
DVFQQFSRQGASANAFTSFTRTAYLFSSTSNVEENLETLVDFVQDPYFTEKTVEKEKGIIGQEINMYDDNPDWRLFFGLI
ENMYQEHPVRIDIAGTIESISHITKDLLYECYETFYHPSNMLLFVVGPADPEAIIRQVRENQQKKPYTDQPEIVRKEVKE
PGAVFKKEQEIKMNVQSSKCLVGLKSAHPMNTGEALLKHELTINLILECLFGKSSSDYERIYEKGYIDETFSYDYTEEHG
FGFVSVGGDTPEPDKLAEELKQVLFKAKETITAEKLELARKKKIGNFLKSMNSPEYIANQFTRYAFLETSLFDIVTVLES
ITLDDVHRVIEEEVEEDRITVCKVVPKS

Sequences:

>Translated_428_residues
MTKTIEFEQLKETLYYEKMPGGLDVYVLPKEGFNKTYAVFTTKYGSIDNQFVPLGKDEMVRVPDGIAHFLEHKLFEKEDG
DVFQQFSRQGASANAFTSFTRTAYLFSSTSNVEENLETLVDFVQDPYFTEKTVEKEKGIIGQEINMYDDNPDWRLFFGLI
ENMYQEHPVRIDIAGTIESISHITKDLLYECYETFYHPSNMLLFVVGPADPEAIIRQVRENQQKKPYTDQPEIVRKEVKE
PGAVFKKEQEIKMNVQSSKCLVGLKSAHPMNTGEALLKHELTINLILECLFGKSSSDYERIYEKGYIDETFSYDYTEEHG
FGFVSVGGDTPEPDKLAEELKQVLFKAKETITAEKLELARKKKIGNFLKSMNSPEYIANQFTRYAFLETSLFDIVTVLES
ITLDDVHRVIEEEVEEDRITVCKVVPKS
>Mature_427_residues
TKTIEFEQLKETLYYEKMPGGLDVYVLPKEGFNKTYAVFTTKYGSIDNQFVPLGKDEMVRVPDGIAHFLEHKLFEKEDGD
VFQQFSRQGASANAFTSFTRTAYLFSSTSNVEENLETLVDFVQDPYFTEKTVEKEKGIIGQEINMYDDNPDWRLFFGLIE
NMYQEHPVRIDIAGTIESISHITKDLLYECYETFYHPSNMLLFVVGPADPEAIIRQVRENQQKKPYTDQPEIVRKEVKEP
GAVFKKEQEIKMNVQSSKCLVGLKSAHPMNTGEALLKHELTINLILECLFGKSSSDYERIYEKGYIDETFSYDYTEEHGF
GFVSVGGDTPEPDKLAEELKQVLFKAKETITAEKLELARKKKIGNFLKSMNSPEYIANQFTRYAFLETSLFDIVTVLESI
TLDDVHRVIEEEVEEDRITVCKVVPKS

Specific function: Unknown

COG id: COG0612

COG function: function code R; Predicted Zn-dependent peptidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M16 family [H]

Homologues:

Organism=Escherichia coli, GI1787770, Length=187, Percent_Identity=25.668449197861, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011249
- InterPro:   IPR011237
- InterPro:   IPR011765
- InterPro:   IPR007863 [H]

Pfam domain/function: PF00675 Peptidase_M16; PF05193 Peptidase_M16_C [H]

EC number: 3.4.99.- [C]

Molecular weight: Translated: 49258; Mature: 49127

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKTIEFEQLKETLYYEKMPGGLDVYVLPKEGFNKTYAVFTTKYGSIDNQFVPLGKDEMV
CCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEEEECCCCCCCEECCCCCCEE
RVPDGIAHFLEHKLFEKEDGDVFQQFSRQGASANAFTSFTRTAYLFSSTSNVEENLETLV
ECCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHEEECCCCHHHHHHHHH
DFVQDPYFTEKTVEKEKGIIGQEINMYDDNPDWRLFFGLIENMYQEHPVRIDIAGTIESI
HHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECHHHHHH
SHITKDLLYECYETFYHPSNMLLFVVGPADPEAIIRQVRENQQKKPYTDQPEIVRKEVKE
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCC
PGAVFKKEQEIKMNVQSSKCLVGLKSAHPMNTGEALLKHELTINLILECLFGKSSSDYER
CHHHHCCCHHHHEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
IYEKGYIDETFSYDYTEEHGFGFVSVGGDTPEPDKLAEELKQVLFKAKETITAEKLELAR
HHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKKIGNFLKSMNSPEYIANQFTRYAFLETSLFDIVTVLESITLDDVHRVIEEEVEEDRIT
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCEE
VCKVVPKS
EEEECCCC
>Mature Secondary Structure 
TKTIEFEQLKETLYYEKMPGGLDVYVLPKEGFNKTYAVFTTKYGSIDNQFVPLGKDEMV
CCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCEEEEEEEECCCCCCCEECCCCCCEE
RVPDGIAHFLEHKLFEKEDGDVFQQFSRQGASANAFTSFTRTAYLFSSTSNVEENLETLV
ECCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHEEECCCCHHHHHHHHH
DFVQDPYFTEKTVEKEKGIIGQEINMYDDNPDWRLFFGLIENMYQEHPVRIDIAGTIESI
HHHHCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECHHHHHH
SHITKDLLYECYETFYHPSNMLLFVVGPADPEAIIRQVRENQQKKPYTDQPEIVRKEVKE
HHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHCC
PGAVFKKEQEIKMNVQSSKCLVGLKSAHPMNTGEALLKHELTINLILECLFGKSSSDYER
CHHHHCCCHHHHEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
IYEKGYIDETFSYDYTEEHGFGFVSVGGDTPEPDKLAEELKQVLFKAKETITAEKLELAR
HHHCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KKKIGNFLKSMNSPEYIANQFTRYAFLETSLFDIVTVLESITLDDVHRVIEEEVEEDRIT
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCEE
VCKVVPKS
EEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Zn [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Endopeptidases of unknown catalytic mechanism [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]