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The map label for this gene is rimM

Identifier: 52785581

GI number: 52785581

Start: 1779879

End: 1780403

Strand: Direct

Name: rimM

Synonym: BLi01822

Alternate gene names: 52785581

Gene position: 1779879-1780403 (Clockwise)

Preceding gene: 52785580

Following gene: 52785582

Centisome position: 42.15

GC content: 46.29

Gene sequence:

>525_bases
ATGCTGAAACAATGGTTTAATGTAGGGAAAATTGTTAATACTCATGGGGTAAAAGGCGAAGTCCGCGTCATTTCAAGAAC
CGATTTTCCTGAGGAGCGGTACAAGCCCGGAAACGCGCTCTACTTGTTTCTGGAAGGAAAAGACGAGCCTGTCCAGGTGA
CCGTCAGCGCCCACAGGCTTCACAAACAGTTCCACCTTTTGCAGTTTAAAGAGGTTGAAACGCTCACCGAAGCCGAAAAA
TTAAAGAATGCCTTGATTAAAGTTCCCGAAGACCAATTAAGCCAGTTGGCGGAAGACGAATACTACTTTCACGAAATCAT
CGGCTGCGATGTTTTCTCGGAAGACGGGGATTTAATCGGCAAGGTGAAAGAAATTTTAACGCCGGGCGCCAACGATGTCT
GGGTCGTGGCCAGACCGGGAAAGAAAGACGCGCTCATCCCTTATATTGACGCCGTTGTCAAAGAGATTAACGTAGCGGAT
AAAACGATCAAGATTCATATCATGGAAGGATTACTTGACGAATGA

Upstream 100 bases:

>100_bases
ATGGACATTGAAGTCGGGGATAATTGGCATGATATGACGGCGGGAAAAACAATCGTGATTAAAGACGGGATCGTCATTGA
AATTCGTCCGAGGTGAAGAA

Downstream 100 bases:

>100_bases
AAATCGATTTTTTAACGCTTTTTCCGGAAATGTTTGAAGGCGTGCTCGGCTCGTCGATCCTGCAAAAAGCTCAGGACAAG
GACGCTGTCCGTTTTCGCGT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MLKQWFNVGKIVNTHGVKGEVRVISRTDFPEERYKPGNALYLFLEGKDEPVQVTVSAHRLHKQFHLLQFKEVETLTEAEK
LKNALIKVPEDQLSQLAEDEYYFHEIIGCDVFSEDGDLIGKVKEILTPGANDVWVVARPGKKDALIPYIDAVVKEINVAD
KTIKIHIMEGLLDE

Sequences:

>Translated_174_residues
MLKQWFNVGKIVNTHGVKGEVRVISRTDFPEERYKPGNALYLFLEGKDEPVQVTVSAHRLHKQFHLLQFKEVETLTEAEK
LKNALIKVPEDQLSQLAEDEYYFHEIIGCDVFSEDGDLIGKVKEILTPGANDVWVVARPGKKDALIPYIDAVVKEINVAD
KTIKIHIMEGLLDE
>Mature_174_residues
MLKQWFNVGKIVNTHGVKGEVRVISRTDFPEERYKPGNALYLFLEGKDEPVQVTVSAHRLHKQFHLLQFKEVETLTEAEK
LKNALIKVPEDQLSQLAEDEYYFHEIIGCDVFSEDGDLIGKVKEILTPGANDVWVVARPGKKDALIPYIDAVVKEINVAD
KTIKIHIMEGLLDE

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=166, Percent_Identity=30.1204819277108, Blast_Score=84, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_BACLD (Q65JP7)

Other databases:

- EMBL:   AE017333
- EMBL:   CP000002
- RefSeq:   YP_078995.2
- RefSeq:   YP_091410.1
- ProteinModelPortal:   Q65JP7
- SMR:   Q65JP7
- STRING:   Q65JP7
- EnsemblBacteria:   EBBACT00000057757
- EnsemblBacteria:   EBBACT00000061540
- GeneID:   3030989
- GeneID:   3097642
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi01822
- KEGG:   bli:BL05160
- NMPDR:   fig|279010.5.peg.2526
- eggNOG:   COG0806
- GeneTree:   EBGT00050000002368
- HOGENOM:   HBG703775
- ProtClustDB:   PRK00122
- BioCyc:   BLIC279010-1:BLI01822-MONOMER
- BioCyc:   BLIC279010:BL05160-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19797; Mature: 19797

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKQWFNVGKIVNTHGVKGEVRVISRTDFPEERYKPGNALYLFLEGKDEPVQVTVSAHRL
CCCHHHCCCCEEECCCCCCEEEEEECCCCCHHHCCCCCEEEEEEECCCCCEEEEEHHHHH
HKQFHLLQFKEVETLTEAEKLKNALIKVPEDQLSQLAEDEYYFHEIIGCDVFSEDGDLIG
HHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHCCHHHHHHHHCCEEECCCCHHHH
KVKEILTPGANDVWVVARPGKKDALIPYIDAVVKEINVADKTIKIHIMEGLLDE
HHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MLKQWFNVGKIVNTHGVKGEVRVISRTDFPEERYKPGNALYLFLEGKDEPVQVTVSAHRL
CCCHHHCCCCEEECCCCCCEEEEEECCCCCHHHCCCCCEEEEEEECCCCCEEEEEHHHHH
HKQFHLLQFKEVETLTEAEKLKNALIKVPEDQLSQLAEDEYYFHEIIGCDVFSEDGDLIG
HHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHCCHHHHHHHHCCEEECCCCHHHH
KVKEILTPGANDVWVVARPGKKDALIPYIDAVVKEINVADKTIKIHIMEGLLDE
HHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA