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The map label for this gene is xerC [H]

Identifier: 52785296

GI number: 52785296

Start: 1504875

End: 1505933

Strand: Direct

Name: xerC [H]

Synonym: BLi01531

Alternate gene names: 52785296

Gene position: 1504875-1505933 (Clockwise)

Preceding gene: 52785295

Following gene: 52785297

Centisome position: 35.64

GC content: 38.43

Gene sequence:

>1059_bases
ATGTATATGCGGGGGAGACGAAGACCGGCGATTAAACATAGTGAGAAAAATACATACGAAAGTAAGACTCTGTCTGATGT
GTGTAAACAAATTTGTAACGTAAAAATGTCTGAAGGACTTACGAAAGAAACAATTGATCGCTATCGCCGGGTTTGTGAGA
GTGTGGAAGAATTCGCGGAAATTAAAGGACTGTCCACCAGTGTTGAATCTATAGATGTCGAGTTTGCGAGGCAGTACATG
ACCTATATACTGCACGAGAAGAAAACGTTTAAGGGACACCGTTATAAACCAGAAAGTGTGAAAACTCCAGGGTGTTCTCC
GAAATATGCAAATGACCACCTGAAAACTATGAGAGCAGTTTTTACTTTCTGTATAAAGGAAAATATGATTTCGGAAAATC
CATTTCAAAAAATAAATAAAGTCAAGCAGCCGGAACCTGTAATTCAAATATTATCTGTAGAGGAGATGAAGCAGCTTTTA
AAAACACCGAATAAGCGAAAGTTCTCTGAGTTTAGAGATTACGTGGTTATGATGTGTTTAATTAACTCTATGTGTAGAAT
CGGAGAAATCGTCACTTTAGAGATCGAAAATATAAATTTTGAGTTGAGCTACATTATTCTTGAAGCTCAAAAAACAAAAA
CGAGAAAAGGCCGTATGATTCCATTAGATAAAAATACAATGCAGCTGCTTAAAAAGTTATTGTTAAGAAATACGCGATTT
AAGCCTAGCAAGTATGTCTTCATTACGGAGGAAGGGACAAGATTAACGACCGACAATTTTAGAAAACGGCTTGCGGATTA
CGCTCATCAGGCAGGAATAAATAAAAGAGTCCATCCGCATTTATTTAGACACACCGCGGCGAGCATGTTTTTGCAGGCAG
GAGGGGATCTTAGGCACCTCCAGACGATCATCGGCCATAAAGATTTACGTATGGTATTACGATATACTCATCTGTCGTTA
GAATCCCTCGCAAGGCAACAGAGTGAATATTCGCTAATAAACCAAGTGGTAGATGGGTTAAATAAGCCAAGGAAGACAAA
AAGAAAATACGGAAGGTAG

Upstream 100 bases:

>100_bases
GAAAAATACTGCTTTATTCTCGTTTTAAAAGAGTTATTTTTCGGTTTTCACTTGAAGTGACTAAATAATTCAGTTATTCT
GACAATGAGGAGGGGATGAG

Downstream 100 bases:

>100_bases
GAAATATCGTGACTCAAAAGAAAAAAATTTTCTCGGTAGAAGAAAGTCTTCCTGATCTCTCTGGAATGTTTAATAATATC
TCGGCATCGCCAAACCCAAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MYMRGRRRPAIKHSEKNTYESKTLSDVCKQICNVKMSEGLTKETIDRYRRVCESVEEFAEIKGLSTSVESIDVEFARQYM
TYILHEKKTFKGHRYKPESVKTPGCSPKYANDHLKTMRAVFTFCIKENMISENPFQKINKVKQPEPVIQILSVEEMKQLL
KTPNKRKFSEFRDYVVMMCLINSMCRIGEIVTLEIENINFELSYIILEAQKTKTRKGRMIPLDKNTMQLLKKLLLRNTRF
KPSKYVFITEEGTRLTTDNFRKRLADYAHQAGINKRVHPHLFRHTAASMFLQAGGDLRHLQTIIGHKDLRMVLRYTHLSL
ESLARQQSEYSLINQVVDGLNKPRKTKRKYGR

Sequences:

>Translated_352_residues
MYMRGRRRPAIKHSEKNTYESKTLSDVCKQICNVKMSEGLTKETIDRYRRVCESVEEFAEIKGLSTSVESIDVEFARQYM
TYILHEKKTFKGHRYKPESVKTPGCSPKYANDHLKTMRAVFTFCIKENMISENPFQKINKVKQPEPVIQILSVEEMKQLL
KTPNKRKFSEFRDYVVMMCLINSMCRIGEIVTLEIENINFELSYIILEAQKTKTRKGRMIPLDKNTMQLLKKLLLRNTRF
KPSKYVFITEEGTRLTTDNFRKRLADYAHQAGINKRVHPHLFRHTAASMFLQAGGDLRHLQTIIGHKDLRMVLRYTHLSL
ESLARQQSEYSLINQVVDGLNKPRKTKRKYGR
>Mature_352_residues
MYMRGRRRPAIKHSEKNTYESKTLSDVCKQICNVKMSEGLTKETIDRYRRVCESVEEFAEIKGLSTSVESIDVEFARQYM
TYILHEKKTFKGHRYKPESVKTPGCSPKYANDHLKTMRAVFTFCIKENMISENPFQKINKVKQPEPVIQILSVEEMKQLL
KTPNKRKFSEFRDYVVMMCLINSMCRIGEIVTLEIENINFELSYIILEAQKTKTRKGRMIPLDKNTMQLLKKLLLRNTRF
KPSKYVFITEEGTRLTTDNFRKRLADYAHQAGINKRVHPHLFRHTAASMFLQAGGDLRHLQTIIGHKDLRMVLRYTHLSL
ESLARQQSEYSLINQVVDGLNKPRKTKRKYGR

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. Binds cooperatively to specific DNA consensus sequences that are separated from xerD binding sites by a short central region, forming

COG id: COG4973

COG function: function code L; Site-specific recombinase XerC

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=301, Percent_Identity=24.5847176079734, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1789261, Length=307, Percent_Identity=23.1270358306189, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1790767, Length=172, Percent_Identity=26.7441860465116, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790768, Length=167, Percent_Identity=23.3532934131737, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 41325; Mature: 41325

Theoretical pI: Translated: 10.40; Mature: 10.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYMRGRRRPAIKHSEKNTYESKTLSDVCKQICNVKMSEGLTKETIDRYRRVCESVEEFAE
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHH
IKGLSTSVESIDVEFARQYMTYILHEKKTFKGHRYKPESVKTPGCSPKYANDHLKTMRAV
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
FTFCIKENMISENPFQKINKVKQPEPVIQILSVEEMKQLLKTPNKRKFSEFRDYVVMMCL
HHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
INSMCRIGEIVTLEIENINFELSYIILEAQKTKTRKGRMIPLDKNTMQLLKKLLLRNTRF
HHHHHHHCCEEEEEEECCCEEEEEEEEECHHHHCCCCCEECCCCHHHHHHHHHHHHCCCC
KPSKYVFITEEGTRLTTDNFRKRLADYAHQAGINKRVHPHLFRHTAASMFLQAGGDLRHL
CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHH
QTIIGHKDLRMVLRYTHLSLESLARQQSEYSLINQVVDGLNKPRKTKRKYGR
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC
>Mature Secondary Structure
MYMRGRRRPAIKHSEKNTYESKTLSDVCKQICNVKMSEGLTKETIDRYRRVCESVEEFAE
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHH
IKGLSTSVESIDVEFARQYMTYILHEKKTFKGHRYKPESVKTPGCSPKYANDHLKTMRAV
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
FTFCIKENMISENPFQKINKVKQPEPVIQILSVEEMKQLLKTPNKRKFSEFRDYVVMMCL
HHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
INSMCRIGEIVTLEIENINFELSYIILEAQKTKTRKGRMIPLDKNTMQLLKKLLLRNTRF
HHHHHHHCCEEEEEEECCCEEEEEEEEECHHHHCCCCCEECCCCHHHHHHHHHHHHCCCC
KPSKYVFITEEGTRLTTDNFRKRLADYAHQAGINKRVHPHLFRHTAASMFLQAGGDLRHL
CCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHH
QTIIGHKDLRMVLRYTHLSLESLARQQSEYSLINQVVDGLNKPRKTKRKYGR
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA