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The map label for this gene is xkdE [H]

Identifier: 52785097

GI number: 52785097

Start: 1324880

End: 1326394

Strand: Direct

Name: xkdE [H]

Synonym: BLi01329

Alternate gene names: 52785097

Gene position: 1324880-1326394 (Clockwise)

Preceding gene: 52785096

Following gene: 52785098

Centisome position: 31.38

GC content: 49.5

Gene sequence:

>1515_bases
ATGTCCACTCAGCAAACGGTAAGAGCGAAAGTCATGAAATCCCGTTTTCACGGGCCTGTAACAAAACAAATATATGAAGA
TCAATTTTCGGAGATCTACGGCGATGATATTATCGCTCCGCCGTACAATTTGAAAGAATTGAAAGCCATTGCCGAATATT
CTTCAATTCTTCAGCAATGCATTGACGCCTATAAAACGAATATTGCGGGGTTCGGGCTCGATGTAGAATACGCTTTTGAT
TTCAACGGGGCGGATGTGACGCCCGATCGGAAAAAAGCTGCTGAGTCCGATTGGACAAGGCTTGAAGATTTTTGCCGCCA
CCTTCATTTTGACGAATCGGCTGAAACAATTTTAAGCCATATGATAGAGGACCGCGAAAAAACCGGGAACGGGTTTTTGG
AGGTGCTCAGAAACGGTGCGGGGCAGCCGGCCGGAATTGAATATCTCGATGTCAAAAATATGCGGGTATGCGGATTGACA
GAACCGATCGAAGTTGAATTCGCCTACATGGAAAACGGATCGCTAAAAAACATCAAGAGGGAGAAAAGGTTCCGCAAATA
CGTTCAGATGATTGACGGCAGGAAAGTGTACTTTAAAGAGTACGGCGATCCGCGCGTCATGGATATGACCACCGGAGAGT
TTGACAGGCAGACTCCCCCTGAACGAAGCGCGAATGAAGCGATCCATTTTAAAATCGGCAGCGGCGTCTACGGCGTTCCG
CGCTGGATCGGAAATATTGTCAACCTGTACGGGGCGCGGAAAGCGGAAGAGCTGAATTATATGTACTTCAGACAAGGCCG
GCACGTACCTGCCGTCATTACGGTTGAAAACGGCATGCTCTCAGAGGCTTCCTACAGAGAGCTGCAGGAATATATGAACG
ACTTGGAAGGGGTTGAAAATGCCCACAAATTTTTGCTGATCGAAGCGGAGGGAATCGCACAGGAAAAAGACATTCACGGC
AGCCAGGACATTACGCCGGTGAAGGTGGACATCAAATCCCTCGCCGAAATTTTGCAGGAAGATGCGCTGTTTCTTGAATA
TGACGAGAAAACCCGGAATAAAATCCGCTCTTCCTTCAGGCTCCCGCCGCTCTACACCGGTGATGCCCATGAATATAACA
GGGCGACAGCCGATACCGCCCGCAAAATCACCGAAGAACAGGTTTTTGAACCGGAGCGGAAAATATTGATCGGCAAGCTG
AATACGCTGTTTCTCCGCGATTTAAACATTTTCCACGCGAGGCTCCAGCTGAAAGGACCGGACTTTCGCGATCCGCTTGA
GATCGCAAAAGTGCTCGGTCCTTTTATTCAGGCAGGAGCAGTATCTGCAAATGATTTGCGCGACCTGGCCGGCAGAGTGC
TCGGCAAGACGCTAGATGAATGGCCGGAGGAAGAATTCAGCAGGCCGCTCGTTTACCAGGAAAGCTCAAAGCGTGCGGAA
GCGGAAGCAGGAGCATTGCTGCCTGAACTGCAGGAAGCCGTCGAGACATTGAAACAGATCACTGAAAGGAGGTGA

Upstream 100 bases:

>100_bases
TTCCGCGCTATGGTACGCGCTTGATGATTATGAAGTAACCGATTTGAAGGCTGAGCCGGAAGTGAGAAAACGGCCGAACA
GGAAAAGGGGGAGATAGCGT

Downstream 100 bases:

>100_bases
ACATTTCGTGCCGAGAGAGCTTAAAAATGCCAAAATCAATTTCGTCAGTTATGTCGACAAAGCGGCGAACAAAAAGAAAT
TCTTCATGACGAAGTCGAGT

Product: XkdE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 504; Mature: 503

Protein sequence:

>504_residues
MSTQQTVRAKVMKSRFHGPVTKQIYEDQFSEIYGDDIIAPPYNLKELKAIAEYSSILQQCIDAYKTNIAGFGLDVEYAFD
FNGADVTPDRKKAAESDWTRLEDFCRHLHFDESAETILSHMIEDREKTGNGFLEVLRNGAGQPAGIEYLDVKNMRVCGLT
EPIEVEFAYMENGSLKNIKREKRFRKYVQMIDGRKVYFKEYGDPRVMDMTTGEFDRQTPPERSANEAIHFKIGSGVYGVP
RWIGNIVNLYGARKAEELNYMYFRQGRHVPAVITVENGMLSEASYRELQEYMNDLEGVENAHKFLLIEAEGIAQEKDIHG
SQDITPVKVDIKSLAEILQEDALFLEYDEKTRNKIRSSFRLPPLYTGDAHEYNRATADTARKITEEQVFEPERKILIGKL
NTLFLRDLNIFHARLQLKGPDFRDPLEIAKVLGPFIQAGAVSANDLRDLAGRVLGKTLDEWPEEEFSRPLVYQESSKRAE
AEAGALLPELQEAVETLKQITERR

Sequences:

>Translated_504_residues
MSTQQTVRAKVMKSRFHGPVTKQIYEDQFSEIYGDDIIAPPYNLKELKAIAEYSSILQQCIDAYKTNIAGFGLDVEYAFD
FNGADVTPDRKKAAESDWTRLEDFCRHLHFDESAETILSHMIEDREKTGNGFLEVLRNGAGQPAGIEYLDVKNMRVCGLT
EPIEVEFAYMENGSLKNIKREKRFRKYVQMIDGRKVYFKEYGDPRVMDMTTGEFDRQTPPERSANEAIHFKIGSGVYGVP
RWIGNIVNLYGARKAEELNYMYFRQGRHVPAVITVENGMLSEASYRELQEYMNDLEGVENAHKFLLIEAEGIAQEKDIHG
SQDITPVKVDIKSLAEILQEDALFLEYDEKTRNKIRSSFRLPPLYTGDAHEYNRATADTARKITEEQVFEPERKILIGKL
NTLFLRDLNIFHARLQLKGPDFRDPLEIAKVLGPFIQAGAVSANDLRDLAGRVLGKTLDEWPEEEFSRPLVYQESSKRAE
AEAGALLPELQEAVETLKQITERR
>Mature_503_residues
STQQTVRAKVMKSRFHGPVTKQIYEDQFSEIYGDDIIAPPYNLKELKAIAEYSSILQQCIDAYKTNIAGFGLDVEYAFDF
NGADVTPDRKKAAESDWTRLEDFCRHLHFDESAETILSHMIEDREKTGNGFLEVLRNGAGQPAGIEYLDVKNMRVCGLTE
PIEVEFAYMENGSLKNIKREKRFRKYVQMIDGRKVYFKEYGDPRVMDMTTGEFDRQTPPERSANEAIHFKIGSGVYGVPR
WIGNIVNLYGARKAEELNYMYFRQGRHVPAVITVENGMLSEASYRELQEYMNDLEGVENAHKFLLIEAEGIAQEKDIHGS
QDITPVKVDIKSLAEILQEDALFLEYDEKTRNKIRSSFRLPPLYTGDAHEYNRATADTARKITEEQVFEPERKILIGKLN
TLFLRDLNIFHARLQLKGPDFRDPLEIAKVLGPFIQAGAVSANDLRDLAGRVLGKTLDEWPEEEFSRPLVYQESSKRAEA
EAGALLPELQEAVETLKQITERR

Specific function: Unknown

COG id: COG5518

COG function: function code R; Bacteriophage capsid portal protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phage portal family. PBSX subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006944
- InterPro:   IPR016753
- InterPro:   IPR006430 [H]

Pfam domain/function: PF04860 Phage_portal [H]

EC number: NA

Molecular weight: Translated: 57662; Mature: 57531

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTQQTVRAKVMKSRFHGPVTKQIYEDQFSEIYGDDIIAPPYNLKELKAIAEYSSILQQC
CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
IDAYKTNIAGFGLDVEYAFDFNGADVTPDRKKAAESDWTRLEDFCRHLHFDESAETILSH
HHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
MIEDREKTGNGFLEVLRNGAGQPAGIEYLDVKNMRVCGLTEPIEVEFAYMENGSLKNIKR
HHHHHHHCCHHHHHHHHCCCCCCCCCEEEECCCEEEECCCCCCEEEEEEECCCCHHHHHH
EKRFRKYVQMIDGRKVYFKEYGDPRVMDMTTGEFDRQTPPERSANEAIHFKIGSGVYGVP
HHHHHHHHHHHCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCHHH
RWIGNIVNLYGARKAEELNYMYFRQGRHVPAVITVENGMLSEASYRELQEYMNDLEGVEN
HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
AHKFLLIEAEGIAQEKDIHGSQDITPVKVDIKSLAEILQEDALFLEYDEKTRNKIRSSFR
CCEEEEEECCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHCCEEEEECHHHHHHHHHHCC
LPPLYTGDAHEYNRATADTARKITEEQVFEPERKILIGKLNTLFLRDLNIFHARLQLKGP
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHEEHHHHHHHHHHHHHHHEEEEEECCC
DFRDPLEIAKVLGPFIQAGAVSANDLRDLAGRVLGKTLDEWPEEEFSRPLVYQESSKRAE
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCEEECCCCHHHH
AEAGALLPELQEAVETLKQITERR
HHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STQQTVRAKVMKSRFHGPVTKQIYEDQFSEIYGDDIIAPPYNLKELKAIAEYSSILQQC
CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
IDAYKTNIAGFGLDVEYAFDFNGADVTPDRKKAAESDWTRLEDFCRHLHFDESAETILSH
HHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
MIEDREKTGNGFLEVLRNGAGQPAGIEYLDVKNMRVCGLTEPIEVEFAYMENGSLKNIKR
HHHHHHHCCHHHHHHHHCCCCCCCCCEEEECCCEEEECCCCCCEEEEEEECCCCHHHHHH
EKRFRKYVQMIDGRKVYFKEYGDPRVMDMTTGEFDRQTPPERSANEAIHFKIGSGVYGVP
HHHHHHHHHHHCCCEEEEEECCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCCCHHH
RWIGNIVNLYGARKAEELNYMYFRQGRHVPAVITVENGMLSEASYRELQEYMNDLEGVEN
HHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCC
AHKFLLIEAEGIAQEKDIHGSQDITPVKVDIKSLAEILQEDALFLEYDEKTRNKIRSSFR
CCEEEEEECCCCCCCCCCCCCCCCCEEEECHHHHHHHHHHCCEEEEECHHHHHHHHHHCC
LPPLYTGDAHEYNRATADTARKITEEQVFEPERKILIGKLNTLFLRDLNIFHARLQLKGP
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHEEHHHHHHHHHHHHHHHEEEEEECCC
DFRDPLEIAKVLGPFIQAGAVSANDLRDLAGRVLGKTLDEWPEEEFSRPLVYQESSKRAE
CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHCCCEEECCCCHHHH
AEAGALLPELQEAVETLKQITERR
HHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]