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The map label for this gene is yisR [H]

Identifier: 52784950

GI number: 52784950

Start: 1186460

End: 1187323

Strand: Direct

Name: yisR [H]

Synonym: BLi01178

Alternate gene names: 52784950

Gene position: 1186460-1187323 (Clockwise)

Preceding gene: 52784946

Following gene: 52784951

Centisome position: 28.1

GC content: 48.73

Gene sequence:

>864_bases
ATGGAACATATCATCTTTACAATTCCGCCGCTCCCTGTGTTGATTACCGGCGGAGAAGGGCTGTTCAAAAGAGGGGAAAA
GCATGTGAGGCGTGAATATTCCGTGTTTGATCTCTTATATGTGATACAGGGGGAACTATTTTTGACTGAGGACGGCGAGC
CCCATCAGATCCGGGAAGGGGAATACATCATCCTTATTCCGGGGCTCGAGCATTATGGCCACCGCGGCTGTCAAGACGAT
ACCCGCTATTTTTGGCTGCACTTTCAGGAGCCGTCCTATGGCTTCGCGCAGCAGGGAGGTGAGAACTGGACTGAACTCAA
GCTGAGGAAGGGGACATTTGAAACGCCGACATTGTATCATTTAAAGATTCCGAGAAAGGGAAAGATCGACCAAAAAGCGT
TTATCGAACAGCAGTTTAGGCGTTTGATTGACGATTCCGCCCAAAATTCCGACCTGCCGCTTCGCAGGCAGCTCTTGTTC
GAAGAGCTGCTGATTCACTTGCAGAAGGAGGCGTTCCATATTCCTTCGGCGAGTGAGCGTGTAGCATCCGAAGCACAGCA
TTACATCGACCGCCATTATAAGGAGAAGCTCAGCATGGAGCAGCTCTCGGCTGCCCTTCATTATCACCAGGACTACATTA
CCCGCTGCATGCAAAAGGTGTTTGGCATCACACCGGGCCAATATGCCAATAAGGCGAAAGTTTTTGAAGCGAAGCGGCTC
CTCTCTTCTACAAACGACAAAATGTCATCGATTGCCGAACAAGTCGGAATCGATGATCCGACCTATTTCTCAAAGCTGTT
TAAACAAATAGAAGGGATTTCGCCCGTTGAATACAGAAAGATGATGAAGCGAAATATTGAGTGA

Upstream 100 bases:

>100_bases
AAAATTCCGTTTTATAGTGTAACGCCATTTTCTTATAATAAGAAGAGACGAAACCGATACTTCTTGGAGAAATCCGACTT
GATGAAAAAGGGGAGAGAAC

Downstream 100 bases:

>100_bases
TATTTTCAAAGCATAGGAGGAGATAAGTTTGGCATCCATCAATGGTGAAAAAGTGAAATTGCGTACGATCACAATGGATG
ACCTGCCCGGATTATGGAGA

Product: YisR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MEHIIFTIPPLPVLITGGEGLFKRGEKHVRREYSVFDLLYVIQGELFLTEDGEPHQIREGEYIILIPGLEHYGHRGCQDD
TRYFWLHFQEPSYGFAQQGGENWTELKLRKGTFETPTLYHLKIPRKGKIDQKAFIEQQFRRLIDDSAQNSDLPLRRQLLF
EELLIHLQKEAFHIPSASERVASEAQHYIDRHYKEKLSMEQLSAALHYHQDYITRCMQKVFGITPGQYANKAKVFEAKRL
LSSTNDKMSSIAEQVGIDDPTYFSKLFKQIEGISPVEYRKMMKRNIE

Sequences:

>Translated_287_residues
MEHIIFTIPPLPVLITGGEGLFKRGEKHVRREYSVFDLLYVIQGELFLTEDGEPHQIREGEYIILIPGLEHYGHRGCQDD
TRYFWLHFQEPSYGFAQQGGENWTELKLRKGTFETPTLYHLKIPRKGKIDQKAFIEQQFRRLIDDSAQNSDLPLRRQLLF
EELLIHLQKEAFHIPSASERVASEAQHYIDRHYKEKLSMEQLSAALHYHQDYITRCMQKVFGITPGQYANKAKVFEAKRL
LSSTNDKMSSIAEQVGIDDPTYFSKLFKQIEGISPVEYRKMMKRNIE
>Mature_287_residues
MEHIIFTIPPLPVLITGGEGLFKRGEKHVRREYSVFDLLYVIQGELFLTEDGEPHQIREGEYIILIPGLEHYGHRGCQDD
TRYFWLHFQEPSYGFAQQGGENWTELKLRKGTFETPTLYHLKIPRKGKIDQKAFIEQQFRRLIDDSAQNSDLPLRRQLLF
EELLIHLQKEAFHIPSASERVASEAQHYIDRHYKEKLSMEQLSAALHYHQDYITRCMQKVFGITPGQYANKAKVFEAKRL
LSSTNDKMSSIAEQVGIDDPTYFSKLFKQIEGISPVEYRKMMKRNIE

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=252, Percent_Identity=21.8253968253968, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787987, Length=97, Percent_Identity=32.9896907216495, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33622; Mature: 33622

Theoretical pI: Translated: 7.21; Mature: 7.21

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEHIIFTIPPLPVLITGGEGLFKRGEKHVRREYSVFDLLYVIQGELFLTEDGEPHQIREG
CCCEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEECCC
EYIILIPGLEHYGHRGCQDDTRYFWLHFQEPSYGFAQQGGENWTELKLRKGTFETPTLYH
CEEEEECCHHHHCCCCCCCCCEEEEEEECCCCCCHHHCCCCCCCEEEEECCCCCCCEEEE
LKIPRKGKIDQKAFIEQQFRRLIDDSAQNSDLPLRRQLLFEELLIHLQKEAFHIPSASER
EECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
VASEAQHYIDRHYKEKLSMEQLSAALHYHQDYITRCMQKVFGITPGQYANKAKVFEAKRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
LSSTNDKMSSIAEQVGIDDPTYFSKLFKQIEGISPVEYRKMMKRNIE
HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MEHIIFTIPPLPVLITGGEGLFKRGEKHVRREYSVFDLLYVIQGELFLTEDGEPHQIREG
CCCEEEECCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCEECCC
EYIILIPGLEHYGHRGCQDDTRYFWLHFQEPSYGFAQQGGENWTELKLRKGTFETPTLYH
CEEEEECCHHHHCCCCCCCCCEEEEEEECCCCCCHHHCCCCCCCEEEEECCCCCCCEEEE
LKIPRKGKIDQKAFIEQQFRRLIDDSAQNSDLPLRRQLLFEELLIHLQKEAFHIPSASER
EECCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH
VASEAQHYIDRHYKEKLSMEQLSAALHYHQDYITRCMQKVFGITPGQYANKAKVFEAKRL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
LSSTNDKMSSIAEQVGIDDPTYFSKLFKQIEGISPVEYRKMMKRNIE
HHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353932; 9384377; 8407808 [H]