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The map label for this gene is amyD [H]

Identifier: 52784913

GI number: 52784913

Start: 1147231

End: 1148154

Strand: Direct

Name: amyD [H]

Synonym: BLi01141

Alternate gene names: 52784913

Gene position: 1147231-1148154 (Clockwise)

Preceding gene: 52784912

Following gene: 52784914

Centisome position: 27.17

GC content: 47.19

Gene sequence:

>924_bases
ATGAGCGAATTAGCTAAAGAAAAAAGTCTGACTATTGTGAAAAGTAAAAGGAGATATGTGAGGAAAAATGGATCGCTCTG
GTGGATGTATCTTCCCGCCTTGGCGCTTGTATCCGTCTTTATGATTTATCCGTTTGCGAGCGGCATTAAAATCACGTTCA
CGAACTGGAACGGTTTCTCACAGTCGTATGACTGGATCGGCTTTGCCCAATATAAACGGATGCTGGCCGACCCGGCGACA
TGGCTTGTCGTCAAAAACACCCTCCTGTACGGATTGGGCAGTACGGTTTTCCAGAATGTCATCGGTCTTCTCTATGCCCT
CCTGCTGTTTAAAAGCATCAAAATGAAAGCGCTGACAAGAACGGTTGTCTATTTGCCCGTCATCATCAGCCCGCTGATCA
TGGGGTATATCTGGTACTTCTTCTTCTCCTATGAAGGAGGCGCCTTGAACGATTTGCTGAAACTATTTGGAGCAGGTCCT
GTCAACGCCTTGAGCAGCCCGGAAATCAATCCGTGGATCATCGTATTTGTCAATTCCTATCAGTTTGTCGGTATAGCGAT
GGTCATTTATTTAGCAGGTCTCGGAAGCGTTCCGAAAGATTTTTATGAAGCGGCGCAAATCGACGGAGCAAGCGGTTTTC
AGCAATTTTGGAAGATTACGCTGCCGCTGTTGATGCCTTCTGTCACGATCAACATGGTAATCAATATCATCGGCGGACTG
AAGCTGTTTGATGTCATTTTAGCGCTGACAGGCGGCGGTCCGGGAAATGCTTCGCAATCGATGTCGACTTTTATGTACGA
TCTGTATTTTAAGAGGCAGGATGCCGGCTATGCAGCCGCTCAGGGGGTTTTCATGGCGGTGTTGATACTGCTAATCAGCT
TTACGGCTCTCATCTATTTTAAGCGCAAGGAGGTCGAAGCCTAG

Upstream 100 bases:

>100_bases
GCCGAAGCAGGTATCGGAAAAAATGAAACAGGAATACAGCAGATTACAAGAACAATAGAAAGGATCGTTATCATCATGAT
AAAAAAAGAAGGGTGAAATG

Downstream 100 bases:

>100_bases
ATGAATCGCCAAGAGAAAAAGAAACGGGCGCTGTGGACTTTGCTGGCTGCATGGATTACCGTTTTTCACCTGATTCCGTT
TTATATTTTGCTGACGACGG

Product: AmyD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MSELAKEKSLTIVKSKRRYVRKNGSLWWMYLPALALVSVFMIYPFASGIKITFTNWNGFSQSYDWIGFAQYKRMLADPAT
WLVVKNTLLYGLGSTVFQNVIGLLYALLLFKSIKMKALTRTVVYLPVIISPLIMGYIWYFFFSYEGGALNDLLKLFGAGP
VNALSSPEINPWIIVFVNSYQFVGIAMVIYLAGLGSVPKDFYEAAQIDGASGFQQFWKITLPLLMPSVTINMVINIIGGL
KLFDVILALTGGGPGNASQSMSTFMYDLYFKRQDAGYAAAQGVFMAVLILLISFTALIYFKRKEVEA

Sequences:

>Translated_307_residues
MSELAKEKSLTIVKSKRRYVRKNGSLWWMYLPALALVSVFMIYPFASGIKITFTNWNGFSQSYDWIGFAQYKRMLADPAT
WLVVKNTLLYGLGSTVFQNVIGLLYALLLFKSIKMKALTRTVVYLPVIISPLIMGYIWYFFFSYEGGALNDLLKLFGAGP
VNALSSPEINPWIIVFVNSYQFVGIAMVIYLAGLGSVPKDFYEAAQIDGASGFQQFWKITLPLLMPSVTINMVINIIGGL
KLFDVILALTGGGPGNASQSMSTFMYDLYFKRQDAGYAAAQGVFMAVLILLISFTALIYFKRKEVEA
>Mature_306_residues
SELAKEKSLTIVKSKRRYVRKNGSLWWMYLPALALVSVFMIYPFASGIKITFTNWNGFSQSYDWIGFAQYKRMLADPATW
LVVKNTLLYGLGSTVFQNVIGLLYALLLFKSIKMKALTRTVVYLPVIISPLIMGYIWYFFFSYEGGALNDLLKLFGAGPV
NALSSPEINPWIIVFVNSYQFVGIAMVIYLAGLGSVPKDFYEAAQIDGASGFQQFWKITLPLLMPSVTINMVINIIGGLK
LFDVILALTGGGPGNASQSMSTFMYDLYFKRQDAGYAAAQGVFMAVLILLISFTALIYFKRKEVEA

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=274, Percent_Identity=27.3722627737226, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1789861, Length=283, Percent_Identity=25.7950530035336, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790465, Length=227, Percent_Identity=30.8370044052863, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34325; Mature: 34194

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSELAKEKSLTIVKSKRRYVRKNGSLWWMYLPALALVSVFMIYPFASGIKITFTNWNGFS
CCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
QSYDWIGFAQYKRMLADPATWLVVKNTLLYGLGSTVFQNVIGLLYALLLFKSIKMKALTR
CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVVYLPVIISPLIMGYIWYFFFSYEGGALNDLLKLFGAGPVNALSSPEINPWIIVFVNSY
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCC
QFVGIAMVIYLAGLGSVPKDFYEAAQIDGASGFQQFWKITLPLLMPSVTINMVINIIGGL
HHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KLFDVILALTGGGPGNASQSMSTFMYDLYFKRQDAGYAAAQGVFMAVLILLISFTALIYF
HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
KRKEVEA
HHHHCCC
>Mature Secondary Structure 
SELAKEKSLTIVKSKRRYVRKNGSLWWMYLPALALVSVFMIYPFASGIKITFTNWNGFS
CCHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC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HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]