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The map label for this gene is msmE [H]

Identifier: 52784912

GI number: 52784912

Start: 1145935

End: 1147188

Strand: Direct

Name: msmE [H]

Synonym: BLi01140

Alternate gene names: 52784912

Gene position: 1145935-1147188 (Clockwise)

Preceding gene: 52784911

Following gene: 52784913

Centisome position: 27.14

GC content: 46.41

Gene sequence:

>1254_bases
ATGAAAAAAATCATTTTCTCTTTTGTTCTCCTGATCATTTTGTCTGCAATACTTGCGGGCTGCTCCGGAAAGAATGCCGG
AAAGAGCGGAGATGTCACGCTCACAATGTTTTCGACAATGACAAACGACAGTGAAAAAAACACGCTCAGAAGCATCGCAG
ATGATTTTGAAAAAGAAAATGAAGGCATCAAGATCGATATCAGCTTTCCCGGCCCGGACTATGAAAATATGCTGCGCGTC
AAAATGGCGGCAAATGACATGCCTGATTTGTTCGATACGCACGGCTGGGCGAAGATCCGCTACGGGGAATACACTGCTGA
TTTAAAAGACATGGATTGGGTGAAGCATCTCGATCCAAACCTCGATCCGATTTTGAAGGATGAAAAAGGCAAAGTATATG
CCTACCCTTTCAATCAGGCAAAAGACGGGATCGTCTACAATGCCGGTCTCTTGAAGAAATACGGTCTCAAGCCTCCGCAG
ACGTTGGACGAACTGATGCATGCGCTGGAAACGATCAAAGAAAAAAGCAACGGGAGCGTCATTCCTTTTTGGTTTGCCGG
TTCAGATAAAGGCGCTTTAGCTCAGTTTTATGATCAGCTTGCCACCCCGCTGCTCATCACAGATGATCGCCGCAATGAAA
AAAAAGCTTTGGAAAACGGCACATTCGACTGGTCCGACTACACACTTCTCGCAGAAACCTTTAAAGAGATGCAGGAAAAG
CAATTGATCAATAAAGATATCCTGACGGCAAAACCGTCGCAATTGGTCGAATTGATGGCGCAGGAAAAAATCGGTTTTAC
CCTCTCAGTCACGTCGATCGGCCCTGATACGAGGGAAGTCAATCCAGATATCCAGTTAGGCGTGATGCCGACGCCTGCCG
TTTATGAAGGCGACAAACCGAGCTGGATTGGAGGAGAGCGCCATACCGTTGCTGTCTGGAAAGACTCAGAACACCTCGAA
GAAGCAAAGCGGTTTATCGAATTCGCCGCACAGCCCAAATACGTGAAAAAGATCGCCGAAGCCACCTCATTTCCTCAGGC
ATTAACCAACACAGAAGCTGAAAACTACTATTCTAAGTTTTATGATCAATATGAAGAAATCAAAATCGAACCGTACTTTG
ACCGCGTCTATCTCCCGAGCGGAATGTGGGACGTCATGGGAACGACGGGACAGGAACTATTGGCCGGTACGTTAACGCCG
AAGCAGGTATCGGAAAAAATGAAACAGGAATACAGCAGATTACAAGAACAATAG

Upstream 100 bases:

>100_bases
CGCTTTCCAAGGAGGTGACGCAAATGGATTTACTAAATTCCAGTAAAAAATGAAAGCGCTTTTTATTCACCATTAAAATA
TCATAATTGGAGTGAAATTG

Downstream 100 bases:

>100_bases
AAAGGATCGTTATCATCATGATAAAAAAAGAAGGGTGAAATGATGAGCGAATTAGCTAAAGAAAAAAGTCTGACTATTGT
GAAAAGTAAAAGGAGATATG

Product: MsmE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MKKIIFSFVLLIILSAILAGCSGKNAGKSGDVTLTMFSTMTNDSEKNTLRSIADDFEKENEGIKIDISFPGPDYENMLRV
KMAANDMPDLFDTHGWAKIRYGEYTADLKDMDWVKHLDPNLDPILKDEKGKVYAYPFNQAKDGIVYNAGLLKKYGLKPPQ
TLDELMHALETIKEKSNGSVIPFWFAGSDKGALAQFYDQLATPLLITDDRRNEKKALENGTFDWSDYTLLAETFKEMQEK
QLINKDILTAKPSQLVELMAQEKIGFTLSVTSIGPDTREVNPDIQLGVMPTPAVYEGDKPSWIGGERHTVAVWKDSEHLE
EAKRFIEFAAQPKYVKKIAEATSFPQALTNTEAENYYSKFYDQYEEIKIEPYFDRVYLPSGMWDVMGTTGQELLAGTLTP
KQVSEKMKQEYSRLQEQ

Sequences:

>Translated_417_residues
MKKIIFSFVLLIILSAILAGCSGKNAGKSGDVTLTMFSTMTNDSEKNTLRSIADDFEKENEGIKIDISFPGPDYENMLRV
KMAANDMPDLFDTHGWAKIRYGEYTADLKDMDWVKHLDPNLDPILKDEKGKVYAYPFNQAKDGIVYNAGLLKKYGLKPPQ
TLDELMHALETIKEKSNGSVIPFWFAGSDKGALAQFYDQLATPLLITDDRRNEKKALENGTFDWSDYTLLAETFKEMQEK
QLINKDILTAKPSQLVELMAQEKIGFTLSVTSIGPDTREVNPDIQLGVMPTPAVYEGDKPSWIGGERHTVAVWKDSEHLE
EAKRFIEFAAQPKYVKKIAEATSFPQALTNTEAENYYSKFYDQYEEIKIEPYFDRVYLPSGMWDVMGTTGQELLAGTLTP
KQVSEKMKQEYSRLQEQ
>Mature_417_residues
MKKIIFSFVLLIILSAILAGCSGKNAGKSGDVTLTMFSTMTNDSEKNTLRSIADDFEKENEGIKIDISFPGPDYENMLRV
KMAANDMPDLFDTHGWAKIRYGEYTADLKDMDWVKHLDPNLDPILKDEKGKVYAYPFNQAKDGIVYNAGLLKKYGLKPPQ
TLDELMHALETIKEKSNGSVIPFWFAGSDKGALAQFYDQLATPLLITDDRRNEKKALENGTFDWSDYTLLAETFKEMQEK
QLINKDILTAKPSQLVELMAQEKIGFTLSVTSIGPDTREVNPDIQLGVMPTPAVYEGDKPSWIGGERHTVAVWKDSEHLE
EAKRFIEFAAQPKYVKKIAEATSFPQALTNTEAENYYSKFYDQYEEIKIEPYFDRVYLPSGMWDVMGTTGQELLAGTLTP
KQVSEKMKQEYSRLQEQ

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 47270; Mature: 47270

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS01037 SBP_BACTERIAL_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKIIFSFVLLIILSAILAGCSGKNAGKSGDVTLTMFSTMTNDSEKNTLRSIADDFEKEN
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCC
EGIKIDISFPGPDYENMLRVKMAANDMPDLFDTHGWAKIRYGEYTADLKDMDWVKHLDPN
CCEEEEEECCCCCHHHHEEEEECCCCCCHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCC
LDPILKDEKGKVYAYPFNQAKDGIVYNAGLLKKYGLKPPQTLDELMHALETIKEKSNGSV
CCCCEECCCCCEEEECCCCCCCCEEEECCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCE
IPFWFAGSDKGALAQFYDQLATPLLITDDRRNEKKALENGTFDWSDYTLLAETFKEMQEK
EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHH
QLINKDILTAKPSQLVELMAQEKIGFTLSVTSIGPDTREVNPDIQLGVMPTPAVYEGDKP
HHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCC
SWIGGERHTVAVWKDSEHLEEAKRFIEFAAQPKYVKKIAEATSFPQALTNTEAENYYSKF
CCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHCCHHHHHHHHH
YDQYEEIKIEPYFDRVYLPSGMWDVMGTTGQELLAGTLTPKQVSEKMKQEYSRLQEQ
HHHHHHEEECEEECEEECCCCCHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKIIFSFVLLIILSAILAGCSGKNAGKSGDVTLTMFSTMTNDSEKNTLRSIADDFEKEN
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCC
EGIKIDISFPGPDYENMLRVKMAANDMPDLFDTHGWAKIRYGEYTADLKDMDWVKHLDPN
CCEEEEEECCCCCHHHHEEEEECCCCCCHHHHCCCEEEEEECCCCCCCHHHHHHHHCCCC
LDPILKDEKGKVYAYPFNQAKDGIVYNAGLLKKYGLKPPQTLDELMHALETIKEKSNGSV
CCCCEECCCCCEEEECCCCCCCCEEEECCHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCE
IPFWFAGSDKGALAQFYDQLATPLLITDDRRNEKKALENGTFDWSDYTLLAETFKEMQEK
EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHH
QLINKDILTAKPSQLVELMAQEKIGFTLSVTSIGPDTREVNPDIQLGVMPTPAVYEGDKP
HHHHHHHHCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCCCCC
SWIGGERHTVAVWKDSEHLEEAKRFIEFAAQPKYVKKIAEATSFPQALTNTEAENYYSKF
CCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHCCHHHHHHHHH
YDQYEEIKIEPYFDRVYLPSGMWDVMGTTGQELLAGTLTPKQVSEKMKQEYSRLQEQ
HHHHHHEEECEEECEEECCCCCHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]