Click here to switch to the map view.

The map label for this gene is yhfW [H]

Identifier: 52784888

GI number: 52784888

Start: 1116878

End: 1118407

Strand: Reverse

Name: yhfW [H]

Synonym: BLi01116

Alternate gene names: 52784888

Gene position: 1118407-1116878 (Counterclockwise)

Preceding gene: 52784890

Following gene: 52784887

Centisome position: 26.49

GC content: 50.72

Gene sequence:

>1530_bases
GTGAGCAATCAAGAACAAAAACTGCCGGACTCGCCTGAATCGTATTGGAGAAACAGTACAGACCTTCCTTCGTTCGAGGA
ACTGTCTGAAGATGTCAAAACAGATGTCGCCATCATCGGCGGCGGCATGACCGGACTGACGACGGCTTATTTGCTGACGA
AAAAAGGCTACAGCGTCGTCTTGATCGAATCCGGCCGGATACTCGACGGAACAACCGGCTATACGACAGCCAAAATCACC
GCGCAGCACGATCTGATCTATGACGAACTGATCGGGCATATCGGAATGCCGAATGCGAGGCTGTATTATGAAGCAAATCT
CAAGGCGCTGTCCTTTATCAAAAACCTCGTGCTTGAGCAAAAGATACCGTGCGATTTTGAAGAACAGGACGCGTGCATTT
ACACAACTGAAGAACAATCGGTCCAAAAACTCAGAAAGGAATATGAAGCATACCAAAAGCTCGGGATTGACAGGGAATTC
ATCAAAGATCTCCCCGTCCCAATTGATGTAAAAGCAGGACTCGTCATGAAAAACCAGGCCCAGTTTCATCCGCTGCACTA
TTTGAAATACCTTGCAGAGGCCGTCCGGGAAGCCGGCGGAAAAATATACGAAAACACGGCGTCTAAGGAAATCAAAGAAG
GCGACCGGCCAAAAGTGCTGACAAGAAGCGGACATCAAATCTTCAGCGATTATGTCACGTGCTGCACGCACTTTCCATTT
CATGATAAAAAAGGATTCTATTTTGCAAGGCTTGAGCCGAGCCGGTCATACGTGCTCGCCGTCAAGCCGAAAACGCCGTA
TCCAGGCGGCATGTACTTAAGTATAGACCAGCCTTCACGCTCGCTTCGCTCGGTGACGATCGACGGAGAAAAAATGGTTC
TTGTCGGCGGTGAAAGCCACAAAACCGGCCAGGGAGAAGATACAATCAAGCATTATCAGGCGCTTGAATCATTTGCGGAA
GGCGTGCTCGGCATCGAATCGATCCCTTACCGCTGGTCAGCGCAAGATTTAATCACGCTTGACAAAATTCCGTATATCGG
GCCGATCTATCCGAAAGAAAAGCGCATTCTCGTCGCCACCGGATATCGGAAATGGGGCATGACAACGAGCACCCTCGCCG
CGCAGCTGATGACAGATCATATCGCGGGTGAAGACAATCCTTATCAAGCCGTCTTTCAGCCGGCCCGTTTCCACCCGGAT
CCAAGCATCAAAAAAGCGATTTCCTACAACGCGGATGTTGCAAAACACTTTGCCGAAGGAAAACTCGAGCAGCCGATCAG
GAAGCCGGAAGACCTTGTCAACGGAGAAGGCGCGGTCGTGTCGCATGCCGGGAAACGGGCGGGCGCTTATCGCGATGAAA
AAGGCGAGCTTCATCTGGTTGACACAACATGCACCCATATGGGCTGTGAAGTCGAGTGGAATGATGGAGAAAAGACATGG
GACTGTCCGTGCCACGGCTCAAGGTTTTCGATCGACGGCGATGTCATTGAGGGCCCTGCCGTAGAACCTCTTAAAGATCC
AGAAAGCTGA

Upstream 100 bases:

>100_bases
TGAAAACGCCCCTTTTTTATGACAAGCCGCTTCACATGCATGAATATTTCTCAATTGGGAAAATTTAAGAACAAAACGGA
TGCATGATGGAGGGAACTTT

Downstream 100 bases:

>100_bases
GATGTACAAGTTAAAAAGTAATGAAAAATTGCCGATAAAAAGATAAATGCTGGAAATTTCAAAAAAACGGCAGTTTTATC
ATTAATGATTACAGGGGGAT

Product: YhfW

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 509; Mature: 508

Protein sequence:

>509_residues
MSNQEQKLPDSPESYWRNSTDLPSFEELSEDVKTDVAIIGGGMTGLTTAYLLTKKGYSVVLIESGRILDGTTGYTTAKIT
AQHDLIYDELIGHIGMPNARLYYEANLKALSFIKNLVLEQKIPCDFEEQDACIYTTEEQSVQKLRKEYEAYQKLGIDREF
IKDLPVPIDVKAGLVMKNQAQFHPLHYLKYLAEAVREAGGKIYENTASKEIKEGDRPKVLTRSGHQIFSDYVTCCTHFPF
HDKKGFYFARLEPSRSYVLAVKPKTPYPGGMYLSIDQPSRSLRSVTIDGEKMVLVGGESHKTGQGEDTIKHYQALESFAE
GVLGIESIPYRWSAQDLITLDKIPYIGPIYPKEKRILVATGYRKWGMTTSTLAAQLMTDHIAGEDNPYQAVFQPARFHPD
PSIKKAISYNADVAKHFAEGKLEQPIRKPEDLVNGEGAVVSHAGKRAGAYRDEKGELHLVDTTCTHMGCEVEWNDGEKTW
DCPCHGSRFSIDGDVIEGPAVEPLKDPES

Sequences:

>Translated_509_residues
MSNQEQKLPDSPESYWRNSTDLPSFEELSEDVKTDVAIIGGGMTGLTTAYLLTKKGYSVVLIESGRILDGTTGYTTAKIT
AQHDLIYDELIGHIGMPNARLYYEANLKALSFIKNLVLEQKIPCDFEEQDACIYTTEEQSVQKLRKEYEAYQKLGIDREF
IKDLPVPIDVKAGLVMKNQAQFHPLHYLKYLAEAVREAGGKIYENTASKEIKEGDRPKVLTRSGHQIFSDYVTCCTHFPF
HDKKGFYFARLEPSRSYVLAVKPKTPYPGGMYLSIDQPSRSLRSVTIDGEKMVLVGGESHKTGQGEDTIKHYQALESFAE
GVLGIESIPYRWSAQDLITLDKIPYIGPIYPKEKRILVATGYRKWGMTTSTLAAQLMTDHIAGEDNPYQAVFQPARFHPD
PSIKKAISYNADVAKHFAEGKLEQPIRKPEDLVNGEGAVVSHAGKRAGAYRDEKGELHLVDTTCTHMGCEVEWNDGEKTW
DCPCHGSRFSIDGDVIEGPAVEPLKDPES
>Mature_508_residues
SNQEQKLPDSPESYWRNSTDLPSFEELSEDVKTDVAIIGGGMTGLTTAYLLTKKGYSVVLIESGRILDGTTGYTTAKITA
QHDLIYDELIGHIGMPNARLYYEANLKALSFIKNLVLEQKIPCDFEEQDACIYTTEEQSVQKLRKEYEAYQKLGIDREFI
KDLPVPIDVKAGLVMKNQAQFHPLHYLKYLAEAVREAGGKIYENTASKEIKEGDRPKVLTRSGHQIFSDYVTCCTHFPFH
DKKGFYFARLEPSRSYVLAVKPKTPYPGGMYLSIDQPSRSLRSVTIDGEKMVLVGGESHKTGQGEDTIKHYQALESFAEG
VLGIESIPYRWSAQDLITLDKIPYIGPIYPKEKRILVATGYRKWGMTTSTLAAQLMTDHIAGEDNPYQAVFQPARFHPDP
SIKKAISYNADVAKHFAEGKLEQPIRKPEDLVNGEGAVVSHAGKRAGAYRDEKGELHLVDTTCTHMGCEVEWNDGEKTWD
CPCHGSRFSIDGDVIEGPAVEPLKDPES

Specific function: Unknown

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Rieske domain [H]

Homologues:

Organism=Escherichia coli, GI1787559, Length=411, Percent_Identity=22.8710462287105, Blast_Score=99, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR017941
- InterPro:   IPR005805 [H]

Pfam domain/function: PF01266 DAO; PF00355 Rieske [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 56944; Mature: 56813

Theoretical pI: Translated: 5.74; Mature: 5.74

Prosite motif: PS00200 RIESKE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNQEQKLPDSPESYWRNSTDLPSFEELSEDVKTDVAIIGGGMTGLTTAYLLTKKGYSVV
CCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCEEEEECCHHHHHHHHEEECCCCEEE
LIESGRILDGTTGYTTAKITAQHDLIYDELIGHIGMPNARLYYEANLKALSFIKNLVLEQ
EEECCEEEECCCCCEEEEEEEHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHC
KIPCDFEEQDACIYTTEEQSVQKLRKEYEAYQKLGIDREFIKDLPVPIDVKAGLVMKNQA
CCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEECCCCEEECCCC
QFHPLHYLKYLAEAVREAGGKIYENTASKEIKEGDRPKVLTRSGHQIFSDYVTCCTHFPF
CCCHHHHHHHHHHHHHHCCCEEECCHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHCCCC
HDKKGFYFARLEPSRSYVLAVKPKTPYPGGMYLSIDQPSRSLRSVTIDGEKMVLVGGESH
CCCCCEEEEEECCCCCEEEEECCCCCCCCCEEEEECCCCCCCEEEEECCCEEEEECCCCC
KTGQGEDTIKHYQALESFAEGVLGIESIPYRWSAQDLITLDKIPYIGPIYPKEKRILVAT
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEE
GYRKWGMTTSTLAAQLMTDHIAGEDNPYQAVFQPARFHPDPSIKKAISYNADVAKHFAEG
CCHHHCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHCC
KLEQPIRKPEDLVNGEGAVVSHAGKRAGAYRDEKGELHLVDTTCTHMGCEVEWNDGEKTW
CHHHHCCCCHHHHCCCCCEEECCCHHCCCCCCCCCCEEEEECHHHHCCCEEEECCCCEEE
DCPCHGSRFSIDGDVIEGPAVEPLKDPES
CCCCCCCEEECCCCEECCCCCCCCCCCCC
>Mature Secondary Structure 
SNQEQKLPDSPESYWRNSTDLPSFEELSEDVKTDVAIIGGGMTGLTTAYLLTKKGYSVV
CCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCEEEEECCHHHHHHHHEEECCCCEEE
LIESGRILDGTTGYTTAKITAQHDLIYDELIGHIGMPNARLYYEANLKALSFIKNLVLEQ
EEECCEEEECCCCCEEEEEEEHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHC
KIPCDFEEQDACIYTTEEQSVQKLRKEYEAYQKLGIDREFIKDLPVPIDVKAGLVMKNQA
CCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEECCCCEEECCCC
QFHPLHYLKYLAEAVREAGGKIYENTASKEIKEGDRPKVLTRSGHQIFSDYVTCCTHFPF
CCCHHHHHHHHHHHHHHCCCEEECCHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHCCCC
HDKKGFYFARLEPSRSYVLAVKPKTPYPGGMYLSIDQPSRSLRSVTIDGEKMVLVGGESH
CCCCCEEEEEECCCCCEEEEECCCCCCCCCEEEEECCCCCCCEEEEECCCEEEEECCCCC
KTGQGEDTIKHYQALESFAEGVLGIESIPYRWSAQDLITLDKIPYIGPIYPKEKRILVAT
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEE
GYRKWGMTTSTLAAQLMTDHIAGEDNPYQAVFQPARFHPDPSIKKAISYNADVAKHFAEG
CCHHHCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHCCCHHHHHHHHCC
KLEQPIRKPEDLVNGEGAVVSHAGKRAGAYRDEKGELHLVDTTCTHMGCEVEWNDGEKTW
CHHHHCCCCHHHHCCCCCEEECCCHHCCCCCCCCCCEEEEECHHHHCCCEEEECCCCEEE
DCPCHGSRFSIDGDVIEGPAVEPLKDPES
CCCCCCCEEECCCCEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]