Click here to switch to the map view.

The map label for this gene is yhdP [H]

Identifier: 52784798

GI number: 52784798

Start: 1028244

End: 1029566

Strand: Reverse

Name: yhdP [H]

Synonym: BLi01026

Alternate gene names: 52784798

Gene position: 1029566-1028244 (Counterclockwise)

Preceding gene: 52784799

Following gene: 52784797

Centisome position: 24.38

GC content: 46.64

Gene sequence:

>1323_bases
TTGGAAATAGTTAATTTGATTTTTGTTGCTGTATTAATTGCTTTAACAGCATTTTTCGTAGCGTCTGAGTTTGCGATTAT
CAGAATCAGAAGCTCGCGGGTTGATCAGCTCATTGCTGAAGGAAACAAAACAGCGATTTCGGTGAAAAAAGTCATTACGC
ACTTAGACGAATATTTATCGGCCTGCCAGCTCGGCATCACTTTGACGGCTCTCGGTCTCGGATGGCTCGGGGAGCCGACG
GTCGCCCGGCTGCTTGAACCGCTATTTGTTAAATGGAGCATTCCGAGCTCTGTATCACACATCGTTTCAGTCGTGATCGC
CTTCAGCTTGATTACGTTTTTGCATGTGGTTGTCGGCGAGCTCGCTCCGAAGACGCTTGCGATCCAAAAAGCGGAAGCCG
TTTCCTTTCTTTTTGCAAAACCTTTGATCTGGTTCTACCGCATTATGTTCCCATTCATCTGGGCGCTGAACGGATCAGCA
AGGCTGTTGACGAAAGCGTTTGGCCTTGAAGCGGTTTCTGAAAATGAAATGGCGCACTCAGAGGAAGAGCTGCGAATTAT
TCTGTCAGAAAGCTATAAAAGCGGCGAAATCAATCAATCTGAGTTCAAATATGTCAACAAAATTTTTGAATTCGATGACC
GTCTTGCCAAGGAAATCATGATCCCGAGAACAGAAGTCGTCAGTTTTCCAAATGATATGAAAATCGCCGAGATGATTGAC
ATCACGAAGGCCGAAGGCTATACCCGCTATCCCGTCGAAGACGGTGATAAGGACAACATCGTCGGCGTCATCAATGTCAA
GGAAATACTGACGGCCTGCATCAGCGGAGAATGCTCCAAAGAAGACACGATTGAACAGTTTATCAATCCGATCATTCATG
TGATCGAAACCGTTCCGATCCACGATCTGCTTCTGAAAATGCAGAAAGAGCGCGTTCATATGGCGATCCTTTCTGATGAA
TACGGCGGAACGGCCGGACTCGTGACGGTCGAAGACATCATTGAAGAAATCGTCGGCGAAATCCGCGACGAATTCGATAT
TGATGAAATTAATGAAATCCGCAAAATCGGCGAAAACCACTACATTCTCGACGGCAAAGTGCTCGTCAACCAGGTCAACG
ATTTGCTCGGCATTCAGCTCGACAATGAGGAGATTGACACGATCGGCGGATGGTTCCTGACGCAAAAATATGACGTCCAA
AAAGGCGACATGATCACCGAGCAGGGATTTGAATTCACGATCAACGAAATCGACGGCCACCATGTTTCATACGTTGAGGT
GAAAAAAGCTGCGGAAACGCCGCTGCTTGAAGAAGCGGAATAA

Upstream 100 bases:

>100_bases
AAAAATGACGGTCATCCAGTCATTTTTGCTGCTGCTTTAGTTAATCTTTTACTAAACAGGAGGTGTTACCTTCATTCTCA
CGCTAGAGTGAAGGTCCTAA

Downstream 100 bases:

>100_bases
CATTGTGAACAAACCGGGGGATACAATGAATTTGTATCCTCTTTTTTTTGCGTTCAAAATATGTAACCACTTGATTACAG
AGCAAAATTCAATTATCATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MEIVNLIFVAVLIALTAFFVASEFAIIRIRSSRVDQLIAEGNKTAISVKKVITHLDEYLSACQLGITLTALGLGWLGEPT
VARLLEPLFVKWSIPSSVSHIVSVVIAFSLITFLHVVVGELAPKTLAIQKAEAVSFLFAKPLIWFYRIMFPFIWALNGSA
RLLTKAFGLEAVSENEMAHSEEELRIILSESYKSGEINQSEFKYVNKIFEFDDRLAKEIMIPRTEVVSFPNDMKIAEMID
ITKAEGYTRYPVEDGDKDNIVGVINVKEILTACISGECSKEDTIEQFINPIIHVIETVPIHDLLLKMQKERVHMAILSDE
YGGTAGLVTVEDIIEEIVGEIRDEFDIDEINEIRKIGENHYILDGKVLVNQVNDLLGIQLDNEEIDTIGGWFLTQKYDVQ
KGDMITEQGFEFTINEIDGHHVSYVEVKKAAETPLLEEAE

Sequences:

>Translated_440_residues
MEIVNLIFVAVLIALTAFFVASEFAIIRIRSSRVDQLIAEGNKTAISVKKVITHLDEYLSACQLGITLTALGLGWLGEPT
VARLLEPLFVKWSIPSSVSHIVSVVIAFSLITFLHVVVGELAPKTLAIQKAEAVSFLFAKPLIWFYRIMFPFIWALNGSA
RLLTKAFGLEAVSENEMAHSEEELRIILSESYKSGEINQSEFKYVNKIFEFDDRLAKEIMIPRTEVVSFPNDMKIAEMID
ITKAEGYTRYPVEDGDKDNIVGVINVKEILTACISGECSKEDTIEQFINPIIHVIETVPIHDLLLKMQKERVHMAILSDE
YGGTAGLVTVEDIIEEIVGEIRDEFDIDEINEIRKIGENHYILDGKVLVNQVNDLLGIQLDNEEIDTIGGWFLTQKYDVQ
KGDMITEQGFEFTINEIDGHHVSYVEVKKAAETPLLEEAE
>Mature_440_residues
MEIVNLIFVAVLIALTAFFVASEFAIIRIRSSRVDQLIAEGNKTAISVKKVITHLDEYLSACQLGITLTALGLGWLGEPT
VARLLEPLFVKWSIPSSVSHIVSVVIAFSLITFLHVVVGELAPKTLAIQKAEAVSFLFAKPLIWFYRIMFPFIWALNGSA
RLLTKAFGLEAVSENEMAHSEEELRIILSESYKSGEINQSEFKYVNKIFEFDDRLAKEIMIPRTEVVSFPNDMKIAEMID
ITKAEGYTRYPVEDGDKDNIVGVINVKEILTACISGECSKEDTIEQFINPIIHVIETVPIHDLLLKMQKERVHMAILSDE
YGGTAGLVTVEDIIEEIVGEIRDEFDIDEINEIRKIGENHYILDGKVLVNQVNDLLGIQLDNEEIDTIGGWFLTQKYDVQ
KGDMITEQGFEFTINEIDGHHVSYVEVKKAAETPLLEEAE

Specific function: Unknown

COG id: COG1253

COG function: function code R; Hemolysins and related proteins containing CBS domains

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=404, Percent_Identity=50, Blast_Score=416, Evalue=1e-116,
Organism=Homo sapiens, GI94681046, Length=270, Percent_Identity=27.037037037037, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI40068053, Length=269, Percent_Identity=25.6505576208178, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI40068055, Length=269, Percent_Identity=25.6505576208178, Blast_Score=67, Evalue=4e-11,
Organism=Escherichia coli, GI1790664, Length=447, Percent_Identity=22.8187919463087, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI145693175, Length=377, Percent_Identity=24.4031830238727, Blast_Score=121, Evalue=7e-29,
Organism=Escherichia coli, GI1786879, Length=256, Percent_Identity=27.34375, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87082033, Length=234, Percent_Identity=23.0769230769231, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788119, Length=249, Percent_Identity=26.5060240963855, Blast_Score=73, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17539402, Length=260, Percent_Identity=26.1538461538462, Blast_Score=72, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR002550
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF01595 DUF21 [H]

EC number: NA

Molecular weight: Translated: 49438; Mature: 49438

Theoretical pI: Translated: 4.36; Mature: 4.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIVNLIFVAVLIALTAFFVASEFAIIRIRSSRVDQLIAEGNKTAISVKKVITHLDEYLS
CHHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
ACQLGITLTALGLGWLGEPTVARLLEPLFVKWSIPSSVSHIVSVVIAFSLITFLHVVVGE
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
LAPKTLAIQKAEAVSFLFAKPLIWFYRIMFPFIWALNGSARLLTKAFGLEAVSENEMAHS
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCCHHHCC
EEELRIILSESYKSGEINQSEFKYVNKIFEFDDRLAKEIMIPRTEVVSFPNDMKIAEMID
HHHHEEHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHH
ITKAEGYTRYPVEDGDKDNIVGVINVKEILTACISGECSKEDTIEQFINPIIHVIETVPI
HHHCCCCEECCCCCCCCCCEEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCH
HDLLLKMQKERVHMAILSDEYGGTAGLVTVEDIIEEIVGEIRDEFDIDEINEIRKIGENH
HHHHHHHHHHHHHEEEEECCCCCCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
YILDGKVLVNQVNDLLGIQLDNEEIDTIGGWFLTQKYDVQKGDMITEQGFEFTINEIDGH
EEECHHHHHHHHHHHHCEEECCCCHHHHCCEEEEEEECCCCCCEECCCCCEEEEECCCCC
HVSYVEVKKAAETPLLEEAE
EEEHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MEIVNLIFVAVLIALTAFFVASEFAIIRIRSSRVDQLIAEGNKTAISVKKVITHLDEYLS
CHHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
ACQLGITLTALGLGWLGEPTVARLLEPLFVKWSIPSSVSHIVSVVIAFSLITFLHVVVGE
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHHHHHHHHHHHH
LAPKTLAIQKAEAVSFLFAKPLIWFYRIMFPFIWALNGSARLLTKAFGLEAVSENEMAHS
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCCHHHCC
EEELRIILSESYKSGEINQSEFKYVNKIFEFDDRLAKEIMIPRTEVVSFPNDMKIAEMID
HHHHEEHEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHHHHH
ITKAEGYTRYPVEDGDKDNIVGVINVKEILTACISGECSKEDTIEQFINPIIHVIETVPI
HHHCCCCEECCCCCCCCCCEEEEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCH
HDLLLKMQKERVHMAILSDEYGGTAGLVTVEDIIEEIVGEIRDEFDIDEINEIRKIGENH
HHHHHHHHHHHHHEEEEECCCCCCCCEEEHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCC
YILDGKVLVNQVNDLLGIQLDNEEIDTIGGWFLTQKYDVQKGDMITEQGFEFTINEIDGH
EEECHHHHHHHHHHHHCEEECCCCHHHHCCEEEEEEECCCCCCEECCCCCEEEEECCCCC
HVSYVEVKKAAETPLLEEAE
EEEHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]