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The map label for this gene is yvkB [H]

Identifier: 52784797

GI number: 52784797

Start: 1027516

End: 1028112

Strand: Reverse

Name: yvkB [H]

Synonym: BLi01025

Alternate gene names: 52784797

Gene position: 1028112-1027516 (Counterclockwise)

Preceding gene: 52784798

Following gene: 52784796

Centisome position: 24.35

GC content: 38.53

Gene sequence:

>597_bases
ATGTCAGCACAATCTACAAGGGATCGATTAATCCAAGCGGCGCTTGCCCTTTTCAAAGAAAAAGGATATCAAGCCGCATC
CACCAGAGAAATTGCCCAAAAAGCAGGCGTCAATCATTTGACCCTTTTTAGACACTTCGGAAATAAACAGAATTTATTTC
GGGAAAGTGTTATTCAACATGTGTCATCGGGAGATTTTATTGGAGAACTTGAAGGAATACTGAGCGGCGATTTACGACAA
GACCTCTCATTCATTGCGAAAGCATATCTAAAAGAAAACCTGGAAAAAGGTACTGTTTTTTTACTTTACTTTAATGATGC
AGTACAGGATAAGGAAGTTTGCGAATTAATCATGGATATTCCCCGCCGTCTCAACCGCTTTTTAGAGGCTTATTTTGCAA
AGCTCTACGCCGAAAAAAAAATTTCAGACGGCAACTTTCAAATGTTAAGCCAAATGTTTTTCGGTTTACTGAATCAATAT
ATTATGTTTCAACATTTGCCCGGATTCAAGGAGTCGTTCAATGATCGGATTGATGACTATGTTGAAGAGTGCGTCGATTT
ATTTTACACAAAACTTGAAAAGGAAGTGCCGTCTTGA

Upstream 100 bases:

>100_bases
TTGTATCCTCTTTTTTTTGCGTTCAAAATATGTAACCACTTGATTACAGAGCAAAATTCAATTATCATGTAATCAAGTGA
TTACATTTCAGGAGGGACTT

Downstream 100 bases:

>100_bases
TTACCTTGCAACCGGTTTTGCACATACCTGCAGTTTCCAAATGGGATGAAAAAATAAACTTGAAGATAAGCGGACTTCAA
CCGTTTGACACCATTGATAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MSAQSTRDRLIQAALALFKEKGYQAASTREIAQKAGVNHLTLFRHFGNKQNLFRESVIQHVSSGDFIGELEGILSGDLRQ
DLSFIAKAYLKENLEKGTVFLLYFNDAVQDKEVCELIMDIPRRLNRFLEAYFAKLYAEKKISDGNFQMLSQMFFGLLNQY
IMFQHLPGFKESFNDRIDDYVEECVDLFYTKLEKEVPS

Sequences:

>Translated_198_residues
MSAQSTRDRLIQAALALFKEKGYQAASTREIAQKAGVNHLTLFRHFGNKQNLFRESVIQHVSSGDFIGELEGILSGDLRQ
DLSFIAKAYLKENLEKGTVFLLYFNDAVQDKEVCELIMDIPRRLNRFLEAYFAKLYAEKKISDGNFQMLSQMFFGLLNQY
IMFQHLPGFKESFNDRIDDYVEECVDLFYTKLEKEVPS
>Mature_197_residues
SAQSTRDRLIQAALALFKEKGYQAASTREIAQKAGVNHLTLFRHFGNKQNLFRESVIQHVSSGDFIGELEGILSGDLRQD
LSFIAKAYLKENLEKGTVFLLYFNDAVQDKEVCELIMDIPRRLNRFLEAYFAKLYAEKKISDGNFQMLSQMFFGLLNQYI
MFQHLPGFKESFNDRIDDYVEECVDLFYTKLEKEVPS

Specific function: Potential Regulator Protein For The Acrab Genes. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22922; Mature: 22790

Theoretical pI: Translated: 5.71; Mature: 5.71

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAQSTRDRLIQAALALFKEKGYQAASTREIAQKAGVNHLTLFRHFGNKQNLFRESVIQH
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHH
VSSGDFIGELEGILSGDLRQDLSFIAKAYLKENLEKGTVFLLYFNDAVQDKEVCELIMDI
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
PRRLNRFLEAYFAKLYAEKKISDGNFQMLSQMFFGLLNQYIMFQHLPGFKESFNDRIDDY
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
VEECVDLFYTKLEKEVPS
HHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SAQSTRDRLIQAALALFKEKGYQAASTREIAQKAGVNHLTLFRHFGNKQNLFRESVIQH
CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHH
VSSGDFIGELEGILSGDLRQDLSFIAKAYLKENLEKGTVFLLYFNDAVQDKEVCELIMDI
HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
PRRLNRFLEAYFAKLYAEKKISDGNFQMLSQMFFGLLNQYIMFQHLPGFKESFNDRIDDY
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
VEECVDLFYTKLEKEVPS
HHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]