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The map label for this gene is ybcD

Identifier: 52784643

GI number: 52784643

Start: 861831

End: 864452

Strand: Reverse

Name: ybcD

Synonym: BLi00845

Alternate gene names: NA

Gene position: 864452-861831 (Counterclockwise)

Preceding gene: 52784644

Following gene: 52784642

Centisome position: 20.47

GC content: 52.63

Gene sequence:

>2622_bases
ATGAAAGCAGCACCCACATTGTCTAAACAATTGATATTCCAATATGAACATCAGACTGCGGACTTTAATATGGATGAGTT
GGTTCAATCAGCAGCACGGGTCATCGCGCCGCTTTGGCCGATTGAAACCTTTGCCGCTCGTCATCCGTGGATGGGCCTTG
AAGAACAAACATTTGAACAGACGGCCCGGCAGCTTAAACAGCAGCTTCATGTTGATATCTACCCAAAGTCCTCCATTTTC
CGTTCCGCAAAACAACGGGGAGAAATCGATGAAACGATTCTTGAAAAAAAGCTGATCAATTGGCTCGATTCACATCAGCC
CGGCATGCAGAGGGAAACAGCGGAGGCATTTTGCAAAGCCGCCCTCAAGCTGGACGAAATACCTGGACAGCTCTTGAGAT
CCCGGCAAGTGAAAAAGCTTGCCAAACAAGCGGCCCGCGGGACAATCGATGGCCGAAAAACAAGCTTTATCAAACCGCTC
AGCGTTTTTGCCGGACAGAAAAGTGCTCACCTCCTTGACCATCATGTGATTAAATGGTGCAAGCTGTTCCTTGATGAATC
ACAATCGGCATGGCGGCTTCCGCATCGTGAGAAAGGGTTTTACAGCGCATGGCGGCAGCTTGTTGAACATGATCCCGCTC
TGTCGCGCGCAGAACGCCAACGCCTGAATGGATGGCCGGAAGAGCCGCGGGACGCTATGAAAAAAGCGCTCCGAGCGTTT
GATATTTCCAATGCAGACGTTCAGGCATACCTTGAAGCTCATCTGCTTTCTCTGCCGGGATGGGCCGGGATGATGCTTTG
GCGTTCTCAGCAATCGCAGGACGAAGAAGAACTGCTGCTCGAGTATTTGGCTGTCCGGCTTTCAATGGAATGGATGCTTG
TTGAGCCTTATTTACCGCTGCCTAAGCCGAATCCTGAAAAAGAGATGCAGCTCGTTCCTTTGATTGCGTCCTGGCTGCAT
TGGGGCGGCCTTACGCCTGAAGAATGGCTCGAACTTTCCGCAGCAGAGCAAAAAGCGAGATTAACACTCGCCCGCCGCTT
TGATGATATAACGCGCAGGCGTCTCTGGCTGGAAGCTTGGGAACAAACATACGCCGCTGAGGTAAGGAAGCTCATCACGG
CAAACAAACCTGCCGCTGCTGACAAAAGCGAAACGGTGCTGGCCCAATTCGCATTTTGTATTGACGTCCGTTCAGAGCCG
TTCCGCAGGGCATTGGAAAAGTCAGGCCCTTTTGAAACATATGGAACAGCGGGCTTTTTCAATATGGCAATCGAAACGTG
CGAACTAGGCACTAAACACAGCCACAGCTCTCTGCCGGTCATCCTAAAACCGCAGCATCGAGTAGAAGAAACGGCCGAAG
AATTACCCTTTAAGTCGTATCAAGAACATAAAAAAGCGGCAGCCTCACTGAGCTCCGCCTTTAAAACGATGAAACAGAAT
CTATTGGCGGGCATGCTGCTTCCCGAAGTGAGCGGGCCTTGGCTGAGCCTGCAAATGGCCGCGCGCAGCCTTGTCCCCCG
CGCAGCCGGCCAAGCATTCAGAAATGCGCGGAAAACATGGCTGAAGAAGCCTCAGACAAAGCTCTCGCTTGATCGCACGG
AAACATCTGAAGCCGGCATTCCGGTCGGATTTACGGAAGAAGAAAAAGCCGCCTATGCCAGACAGGCATTAAAGATGATG
GGGATCACAGACCGGTTCGCTCCGCTGGTTGTCATTTGCGGGCACGGCAGCAGAAGCACGAATAACCCTTATGCATCGGC
ACTGGACTGCGGCGCCTGCGGAGGCGCATCTGGCGCTTTCAACGCACGCGTCCTAGCCGCTTTATGCAATCTTCCAAGCG
TCAGAGAGAGGCTTCGCTCCGACGGCATTTTTATTCCGGATGATACGGTATTCGCTGCCGCAGAGCACATTACAACTTTG
GATGAACTGCACTGGCTCTATGTACCTGAGCTGCCGGCTAAAGCTCAACAAGCGTTTGACCGCATCAACTCTGTGCTTCC
CGATGTGAGCCGTACTGTCGGAGCCGAACGCTTAGAAGAGCTGCCGCAGCTCGGCTATCAAAATCCGCGGAATGAAGTTG
AGCGCTTCGCCGAAGATTGGAGCGAAATCCGTCCCGAATGGGGGCTGGCCCGAAATGCCTCATTCATCATCGGCACACGC
CGGCTTACACGGGGGGCCGACCTTGAGGGAAGGGCTTTTCTGCACAGCTATGACTGGCGGAATGACGAGGACGGCTCCAT
CCTTAGCGGCATCATTTCAGGGCCTGGAACAGTGGCCCAATGGATCAATCTGCAGTATTACGCGTCAACCGTTGCACCGC
ATTATTATGGAAGCGGAAATAAAGCAACTCAAACCGTCACTGCCGGTCTCGGCGTTATGCAAGGAAATGCAAGCGATCTT
TTGGCCGGTCTCCCATGGCAGTCCGTCATGCGGTCAGATGACGAAATCTATCATGCGCCTCTCAGGCTGCTGATCGTGAT
TGAAGCGCCGGATGATGATATCGAACGGCTCCTTGACCGCGATCACAGCTTCCGGCAAAAGGCGGAGAACGGATGGATTC
ATCTGGCATCTATTAATCCGGAGGGAAAATGGAAGAACTGGACAAACACGATAAATGAATGA

Upstream 100 bases:

>100_bases
TTTATTTACGTCTTGTGAAAACGGGTGAACCCCATTTCGAATCGGTCGAAGAACGGCCGAATTATCTTGACCAATATCTT
ACTCAGGGAGGTCGCCAATC

Downstream 100 bases:

>100_bases
GGTGAAATGTCATGGAAGAAAACAAAAAAATACTCATGATTATCGGAATGGAGAAACAGCTTGAACAGACCATCTGCCGG
GCAGCAAATATTCAGCCGGA

Product: YbcD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 873; Mature: 873

Protein sequence:

>873_residues
MKAAPTLSKQLIFQYEHQTADFNMDELVQSAARVIAPLWPIETFAARHPWMGLEEQTFEQTARQLKQQLHVDIYPKSSIF
RSAKQRGEIDETILEKKLINWLDSHQPGMQRETAEAFCKAALKLDEIPGQLLRSRQVKKLAKQAARGTIDGRKTSFIKPL
SVFAGQKSAHLLDHHVIKWCKLFLDESQSAWRLPHREKGFYSAWRQLVEHDPALSRAERQRLNGWPEEPRDAMKKALRAF
DISNADVQAYLEAHLLSLPGWAGMMLWRSQQSQDEEELLLEYLAVRLSMEWMLVEPYLPLPKPNPEKEMQLVPLIASWLH
WGGLTPEEWLELSAAEQKARLTLARRFDDITRRRLWLEAWEQTYAAEVRKLITANKPAAADKSETVLAQFAFCIDVRSEP
FRRALEKSGPFETYGTAGFFNMAIETCELGTKHSHSSLPVILKPQHRVEETAEELPFKSYQEHKKAAASLSSAFKTMKQN
LLAGMLLPEVSGPWLSLQMAARSLVPRAAGQAFRNARKTWLKKPQTKLSLDRTETSEAGIPVGFTEEEKAAYARQALKMM
GITDRFAPLVVICGHGSRSTNNPYASALDCGACGGASGAFNARVLAALCNLPSVRERLRSDGIFIPDDTVFAAAEHITTL
DELHWLYVPELPAKAQQAFDRINSVLPDVSRTVGAERLEELPQLGYQNPRNEVERFAEDWSEIRPEWGLARNASFIIGTR
RLTRGADLEGRAFLHSYDWRNDEDGSILSGIISGPGTVAQWINLQYYASTVAPHYYGSGNKATQTVTAGLGVMQGNASDL
LAGLPWQSVMRSDDEIYHAPLRLLIVIEAPDDDIERLLDRDHSFRQKAENGWIHLASINPEGKWKNWTNTINE

Sequences:

>Translated_873_residues
MKAAPTLSKQLIFQYEHQTADFNMDELVQSAARVIAPLWPIETFAARHPWMGLEEQTFEQTARQLKQQLHVDIYPKSSIF
RSAKQRGEIDETILEKKLINWLDSHQPGMQRETAEAFCKAALKLDEIPGQLLRSRQVKKLAKQAARGTIDGRKTSFIKPL
SVFAGQKSAHLLDHHVIKWCKLFLDESQSAWRLPHREKGFYSAWRQLVEHDPALSRAERQRLNGWPEEPRDAMKKALRAF
DISNADVQAYLEAHLLSLPGWAGMMLWRSQQSQDEEELLLEYLAVRLSMEWMLVEPYLPLPKPNPEKEMQLVPLIASWLH
WGGLTPEEWLELSAAEQKARLTLARRFDDITRRRLWLEAWEQTYAAEVRKLITANKPAAADKSETVLAQFAFCIDVRSEP
FRRALEKSGPFETYGTAGFFNMAIETCELGTKHSHSSLPVILKPQHRVEETAEELPFKSYQEHKKAAASLSSAFKTMKQN
LLAGMLLPEVSGPWLSLQMAARSLVPRAAGQAFRNARKTWLKKPQTKLSLDRTETSEAGIPVGFTEEEKAAYARQALKMM
GITDRFAPLVVICGHGSRSTNNPYASALDCGACGGASGAFNARVLAALCNLPSVRERLRSDGIFIPDDTVFAAAEHITTL
DELHWLYVPELPAKAQQAFDRINSVLPDVSRTVGAERLEELPQLGYQNPRNEVERFAEDWSEIRPEWGLARNASFIIGTR
RLTRGADLEGRAFLHSYDWRNDEDGSILSGIISGPGTVAQWINLQYYASTVAPHYYGSGNKATQTVTAGLGVMQGNASDL
LAGLPWQSVMRSDDEIYHAPLRLLIVIEAPDDDIERLLDRDHSFRQKAENGWIHLASINPEGKWKNWTNTINE
>Mature_873_residues
MKAAPTLSKQLIFQYEHQTADFNMDELVQSAARVIAPLWPIETFAARHPWMGLEEQTFEQTARQLKQQLHVDIYPKSSIF
RSAKQRGEIDETILEKKLINWLDSHQPGMQRETAEAFCKAALKLDEIPGQLLRSRQVKKLAKQAARGTIDGRKTSFIKPL
SVFAGQKSAHLLDHHVIKWCKLFLDESQSAWRLPHREKGFYSAWRQLVEHDPALSRAERQRLNGWPEEPRDAMKKALRAF
DISNADVQAYLEAHLLSLPGWAGMMLWRSQQSQDEEELLLEYLAVRLSMEWMLVEPYLPLPKPNPEKEMQLVPLIASWLH
WGGLTPEEWLELSAAEQKARLTLARRFDDITRRRLWLEAWEQTYAAEVRKLITANKPAAADKSETVLAQFAFCIDVRSEP
FRRALEKSGPFETYGTAGFFNMAIETCELGTKHSHSSLPVILKPQHRVEETAEELPFKSYQEHKKAAASLSSAFKTMKQN
LLAGMLLPEVSGPWLSLQMAARSLVPRAAGQAFRNARKTWLKKPQTKLSLDRTETSEAGIPVGFTEEEKAAYARQALKMM
GITDRFAPLVVICGHGSRSTNNPYASALDCGACGGASGAFNARVLAALCNLPSVRERLRSDGIFIPDDTVFAAAEHITTL
DELHWLYVPELPAKAQQAFDRINSVLPDVSRTVGAERLEELPQLGYQNPRNEVERFAEDWSEIRPEWGLARNASFIIGTR
RLTRGADLEGRAFLHSYDWRNDEDGSILSGIISGPGTVAQWINLQYYASTVAPHYYGSGNKATQTVTAGLGVMQGNASDL
LAGLPWQSVMRSDDEIYHAPLRLLIVIEAPDDDIERLLDRDHSFRQKAENGWIHLASINPEGKWKNWTNTINE

Specific function: Unknown

COG id: COG3002

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0753 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y845_BACLD (Q65MD5)

Other databases:

- EMBL:   CP000002
- EMBL:   AE017333
- RefSeq:   YP_078068.1
- RefSeq:   YP_090472.1
- STRING:   Q65MD5
- EnsemblBacteria:   EBBACT00000056434
- EnsemblBacteria:   EBBACT00000062549
- GeneID:   3029663
- GeneID:   3100278
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi00845
- KEGG:   bli:BL00917
- NMPDR:   fig|279010.5.peg.1265
- eggNOG:   COG3002
- GeneTree:   EBGT00070000032392
- HOGENOM:   HBG520117
- OMA:   FAEDWSE
- ProtClustDB:   CLSK884660
- BioCyc:   BLIC279010-1:BLI00845-MONOMER
- BioCyc:   BLIC279010:BL00917-MONOMER
- HAMAP:   MF_01871
- InterPro:   IPR018752

Pfam domain/function: PF10070 DUF2309

EC number: NA

Molecular weight: Translated: 98657; Mature: 98657

Theoretical pI: Translated: 6.94; Mature: 6.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAAPTLSKQLIFQYEHQTADFNMDELVQSAARVIAPLWPIETFAARHPWMGLEEQTFEQ
CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHH
TARQLKQQLHVDIYPKSSIFRSAKQRGEIDETILEKKLINWLDSHQPGMQRETAEAFCKA
HHHHHHHHCCEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
ALKLDEIPGQLLRSRQVKKLAKQAARGTIDGRKTSFIKPLSVFAGQKSAHLLDHHVIKWC
HHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
KLFLDESQSAWRLPHREKGFYSAWRQLVEHDPALSRAERQRLNGWPEEPRDAMKKALRAF
HHHHHCCCCHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
DISNADVQAYLEAHLLSLPGWAGMMLWRSQQSQDEEELLLEYLAVRLSMEWMLVEPYLPL
CCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCEEEECCCCCC
PKPNPEKEMQLVPLIASWLHWGGLTPEEWLELSAAEQKARLTLARRFDDITRRRLWLEAW
CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQTYAAEVRKLITANKPAAADKSETVLAQFAFCIDVRSEPFRRALEKSGPFETYGTAGFF
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHH
NMAIETCELGTKHSHSSLPVILKPQHRVEETAEELPFKSYQEHKKAAASLSSAFKTMKQN
HHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LLAGMLLPEVSGPWLSLQMAARSLVPRAAGQAFRNARKTWLKKPQTKLSLDRTETSEAGI
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCC
PVGFTEEEKAAYARQALKMMGITDRFAPLVVICGHGSRSTNNPYASALDCGACGGASGAF
CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCH
NARVLAALCNLPSVRERLRSDGIFIPDDTVFAAAEHITTLDELHWLYVPELPAKAQQAFD
HHHHHHHHHCCHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHH
RINSVLPDVSRTVGAERLEELPQLGYQNPRNEVERFAEDWSEIRPEWGLARNASFIIGTR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECH
RLTRGADLEGRAFLHSYDWRNDEDGSILSGIISGPGTVAQWINLQYYASTVAPHYYGSGN
HHCCCCCCCCCHHEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEECCCC
KATQTVTAGLGVMQGNASDLLAGLPWQSVMRSDDEIYHAPLRLLIVIEAPDDDIERLLDR
CHHHHHHHCCCEECCCHHHHHHCCCHHHHHCCCCHHHCCCEEEEEEEECCCHHHHHHHHC
DHSFRQKAENGWIHLASINPEGKWKNWTNTINE
CHHHHHHHCCCCEEEEEECCCCCCCCHHHCCCC
>Mature Secondary Structure
MKAAPTLSKQLIFQYEHQTADFNMDELVQSAARVIAPLWPIETFAARHPWMGLEEQTFEQ
CCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCHHHHHH
TARQLKQQLHVDIYPKSSIFRSAKQRGEIDETILEKKLINWLDSHQPGMQRETAEAFCKA
HHHHHHHHCCEECCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
ALKLDEIPGQLLRSRQVKKLAKQAARGTIDGRKTSFIKPLSVFAGQKSAHLLDHHVIKWC
HHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHH
KLFLDESQSAWRLPHREKGFYSAWRQLVEHDPALSRAERQRLNGWPEEPRDAMKKALRAF
HHHHHCCCCHHCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
DISNADVQAYLEAHLLSLPGWAGMMLWRSQQSQDEEELLLEYLAVRLSMEWMLVEPYLPL
CCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCEEEECCCCCC
PKPNPEKEMQLVPLIASWLHWGGLTPEEWLELSAAEQKARLTLARRFDDITRRRLWLEAW
CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQTYAAEVRKLITANKPAAADKSETVLAQFAFCIDVRSEPFRRALEKSGPFETYGTAGFF
HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCHHH
NMAIETCELGTKHSHSSLPVILKPQHRVEETAEELPFKSYQEHKKAAASLSSAFKTMKQN
HHHHHHHHCCCCCCCCCCCEEECCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
LLAGMLLPEVSGPWLSLQMAARSLVPRAAGQAFRNARKTWLKKPQTKLSLDRTETSEAGI
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCC
PVGFTEEEKAAYARQALKMMGITDRFAPLVVICGHGSRSTNNPYASALDCGACGGASGAF
CCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCHHHCCCCCCCCCCCCH
NARVLAALCNLPSVRERLRSDGIFIPDDTVFAAAEHITTLDELHWLYVPELPAKAQQAFD
HHHHHHHHHCCHHHHHHHHHCCEECCCCHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHH
RINSVLPDVSRTVGAERLEELPQLGYQNPRNEVERFAEDWSEIRPEWGLARNASFIIGTR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECH
RLTRGADLEGRAFLHSYDWRNDEDGSILSGIISGPGTVAQWINLQYYASTVAPHYYGSGN
HHCCCCCCCCCHHEEECCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEECCCC
KATQTVTAGLGVMQGNASDLLAGLPWQSVMRSDDEIYHAPLRLLIVIEAPDDDIERLLDR
CHHHHHHHCCCEECCCHHHHHHCCCHHHHHCCCCHHHCCCEEEEEEEECCCHHHHHHHHC
DHSFRQKAENGWIHLASINPEGKWKNWTNTINE
CHHHHHHHCCCCEEEEEECCCCCCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA