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The map label for this gene is licT [H]

Identifier: 52784549

GI number: 52784549

Start: 760981

End: 761829

Strand: Direct

Name: licT [H]

Synonym: BLi00750

Alternate gene names: 52784549

Gene position: 760981-761829 (Clockwise)

Preceding gene: 52784548

Following gene: 52784550

Centisome position: 18.02

GC content: 36.98

Gene sequence:

>849_bases
ATGTTTAAAATAAAAAAAGTTTTAAACTCGAGTGTGGTACTGGCTGTAGATCAGAACCGACAGGAGATGGTTTTATGCGG
CAGGGGCATCGGTTACGGACGAAAACCTGGGAATATGATTGAAGAAAAACAGGCTGATCAAGTCTTTATGCCAGTAGACA
ATATGAAGGCAAAGGAATTTCTCCAACTGTTGGATTCAATTCCGCAAGAATTTATTGAATTGACCCAGCAAATTGTTCAG
CATGCAGAAGAAAGATTAAAAACAAAGCTAAATTCCGGTGTATACTTCACATTAATGGATCACTTGAATTTTGCAGTAGA
GCGCTATAAAAAGAACATCAATATTACGAATCGCGTCTACTGGGAAATTAAAAACTACTATACGGAAGAGTTTGAGGCAG
GGAATTATGCGCTTCAGCTCATCAATGAAACATTTGGGATCCAATTGCCGAAAGAGGAAGCGGCAAATATTGCGTTCCAC
TTAATCAATGCATTAGGTGAAGAGACAGAGTCAAAAGATGGAATGAAAAATGCAAAAATGATCGGGAGCATTGTCAACCT
TGTCCGTTACACATTAAACATGAAATTAGATCAAGAAAATATCCACTACAGCCGATTTATCACACACGTTAAATTTTTCG
TTGAAAGATTTTACGCTGATAAATTGCTGGCAAATCAGGAGAATGAATTATTTGAGCAAATTGCTAATTTATATCCGCAA
GCAATGGATGTAGCTTTCAAAATCAAGGATTATATCAAGCAGGTGCACGGAAACGTCATTCCGAATGATGAACTGACATA
CTTGGCAGTCCATATTCATCGATTGATTTCTTATCAGCAATTAAAATAA

Upstream 100 bases:

>100_bases
AGCGCTCACGTAAAGATTCATTCTACTGGTATAAGAAAGTGATTGAGACAAACGGAGAAGTATTAGACTAAAAAACCGCA
TTCATGAAAAGGTGATGGCG

Downstream 100 bases:

>100_bases
ATGAGAGCCACTTGCCTTTGTGGAAGGCGAGTGGTTTCTTGTTTTTGAAAAAGAAGGAGCGTTTTTTGTTTATAGGCAAG
ATGAGTTGTTGATCACTACC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MFKIKKVLNSSVVLAVDQNRQEMVLCGRGIGYGRKPGNMIEEKQADQVFMPVDNMKAKEFLQLLDSIPQEFIELTQQIVQ
HAEERLKTKLNSGVYFTLMDHLNFAVERYKKNINITNRVYWEIKNYYTEEFEAGNYALQLINETFGIQLPKEEAANIAFH
LINALGEETESKDGMKNAKMIGSIVNLVRYTLNMKLDQENIHYSRFITHVKFFVERFYADKLLANQENELFEQIANLYPQ
AMDVAFKIKDYIKQVHGNVIPNDELTYLAVHIHRLISYQQLK

Sequences:

>Translated_282_residues
MFKIKKVLNSSVVLAVDQNRQEMVLCGRGIGYGRKPGNMIEEKQADQVFMPVDNMKAKEFLQLLDSIPQEFIELTQQIVQ
HAEERLKTKLNSGVYFTLMDHLNFAVERYKKNINITNRVYWEIKNYYTEEFEAGNYALQLINETFGIQLPKEEAANIAFH
LINALGEETESKDGMKNAKMIGSIVNLVRYTLNMKLDQENIHYSRFITHVKFFVERFYADKLLANQENELFEQIANLYPQ
AMDVAFKIKDYIKQVHGNVIPNDELTYLAVHIHRLISYQQLK
>Mature_282_residues
MFKIKKVLNSSVVLAVDQNRQEMVLCGRGIGYGRKPGNMIEEKQADQVFMPVDNMKAKEFLQLLDSIPQEFIELTQQIVQ
HAEERLKTKLNSGVYFTLMDHLNFAVERYKKNINITNRVYWEIKNYYTEEFEAGNYALQLINETFGIQLPKEEAANIAFH
LINALGEETESKDGMKNAKMIGSIVNLVRYTLNMKLDQENIHYSRFITHVKFFVERFYADKLLANQENELFEQIANLYPQ
AMDVAFKIKDYIKQVHGNVIPNDELTYLAVHIHRLISYQQLK

Specific function: Mediates positive regulation of the glucanase operon (licST) by functioning as an antiterminator factor of transcription. Prevents termination at terminator lic-t [H]

COG id: COG3711

COG function: function code K; Transcriptional antiterminator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PRD domains [H]

Homologues:

Organism=Escherichia coli, GI1790160, Length=275, Percent_Identity=29.8181818181818, Blast_Score=155, Evalue=3e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004341
- InterPro:   IPR011608
- InterPro:   IPR001550 [H]

Pfam domain/function: PF03123 CAT_RBD; PF00874 PRD [H]

EC number: NA

Molecular weight: Translated: 32939; Mature: 32939

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKIKKVLNSSVVLAVDQNRQEMVLCGRGIGYGRKPGNMIEEKQADQVFMPVDNMKAKEF
CCHHHHHHCCCEEEEECCCCCEEEEECCCCCCCCCCCCHHHHHCCCEEECCCCCCCHHHH
LQLLDSIPQEFIELTQQIVQHAEERLKTKLNSGVYFTLMDHLNFAVERYKKNINITNRVY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCCHHHH
WEIKNYYTEEFEAGNYALQLINETFGIQLPKEEAANIAFHLINALGEETESKDGMKNAKM
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
IGSIVNLVRYTLNMKLDQENIHYSRFITHVKFFVERFYADKLLANQENELFEQIANLYPQ
HHHHHHHHHHHHHCEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHH
AMDVAFKIKDYIKQVHGNVIPNDELTYLAVHIHRLISYQQLK
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MFKIKKVLNSSVVLAVDQNRQEMVLCGRGIGYGRKPGNMIEEKQADQVFMPVDNMKAKEF
CCHHHHHHCCCEEEEECCCCCEEEEECCCCCCCCCCCCHHHHHCCCEEECCCCCCCHHHH
LQLLDSIPQEFIELTQQIVQHAEERLKTKLNSGVYFTLMDHLNFAVERYKKNINITNRVY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHCCCCCHHHH
WEIKNYYTEEFEAGNYALQLINETFGIQLPKEEAANIAFHLINALGEETESKDGMKNAKM
HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
IGSIVNLVRYTLNMKLDQENIHYSRFITHVKFFVERFYADKLLANQENELFEQIANLYPQ
HHHHHHHHHHHHHCEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHH
AMDVAFKIKDYIKQVHGNVIPNDELTYLAVHIHRLISYQQLK
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8606172; 8969509; 9384377; 6087283 [H]