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The map label for this gene is ydiH

Identifier: 52784424

GI number: 52784424

Start: 623548

End: 624195

Strand: Direct

Name: ydiH

Synonym: BLi00618

Alternate gene names: 52784424

Gene position: 623548-624195 (Clockwise)

Preceding gene: 52784423

Following gene: 52784425

Centisome position: 14.77

GC content: 45.37

Gene sequence:

>648_bases
ATGAACATGGATCATTCAAAAATTCCGCAAGCGACAGCGAAACGGCTGCCATTATATTATCGTTTTTTAAAAAACCTTCA
TGCATCCGGGAAACAGCGTGTATCTTCCGCTGAGCTGAGCGATGCCGTCAAAGTCGATTCCGCGACCATCCGAAGGGATT
TCTCGTACTTCGGCGCGCTCGGGAAAAAAGGATACGGCTACAATGTCAATTATTTGCTGTCCTTTTTCAGAAAGACGCTT
GATCAGGATGAAACGACGAACGTAACGCTTATTGGCGTGGGGAATTTGGGGACAGCCTTTCTCCATTACAATTTTATCAA
AAACAATAATACAAAAATCGCCATGGCGTTTGACATCAATGAAGAAAAAATCGGAACCGAGGTCGGCGGCGTTCCCGTCT
ATGACCTGAATAAGCTTGAAGAGCATATGACGGATGATGATATCCCGGTCGCCATTTTGACGGTTCCAGCTCAAGCCGCA
CAGTCGATTACAGACAGGCTGGTGGCGCTTGGCATTAAAGGCATTCTTAATTTCACGCCGGCTCGCTTGAATGTGCCGGA
ACACATTCGCATTCATCATATAGATTTGGCAGTGGAACTTCAGTCGCTGGTGTATTTTCTGAAACATTATTCAATGCAGG
AAAAGTAA

Upstream 100 bases:

>100_bases
GGGAATGGTGATAGGACCGACCTTTCTTCTCGAAAAGACAGGCGGGAAAAACGGTGACTATAAAAGGGAAAAAGCTGATG
TAGACATGGAGGATTAGTTT

Downstream 100 bases:

>100_bases
AACGGAAAACGAAAAATAAATAAAGGAAAGGGGGCAGGCTTTATGCCAACAATCGGTCCTGGAAGCTTTATTTTAATTGT
CGTGGTGGCGCTTTTGATAT

Product: redox-sensing transcriptional repressor Rex

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MNMDHSKIPQATAKRLPLYYRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYFGALGKKGYGYNVNYLLSFFRKTL
DQDETTNVTLIGVGNLGTAFLHYNFIKNNNTKIAMAFDINEEKIGTEVGGVPVYDLNKLEEHMTDDDIPVAILTVPAQAA
QSITDRLVALGIKGILNFTPARLNVPEHIRIHHIDLAVELQSLVYFLKHYSMQEK

Sequences:

>Translated_215_residues
MNMDHSKIPQATAKRLPLYYRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYFGALGKKGYGYNVNYLLSFFRKTL
DQDETTNVTLIGVGNLGTAFLHYNFIKNNNTKIAMAFDINEEKIGTEVGGVPVYDLNKLEEHMTDDDIPVAILTVPAQAA
QSITDRLVALGIKGILNFTPARLNVPEHIRIHHIDLAVELQSLVYFLKHYSMQEK
>Mature_215_residues
MNMDHSKIPQATAKRLPLYYRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYFGALGKKGYGYNVNYLLSFFRKTL
DQDETTNVTLIGVGNLGTAFLHYNFIKNNNTKIAMAFDINEEKIGTEVGGVPVYDLNKLEEHMTDDDIPVAILTVPAQAA
QSITDRLVALGIKGILNFTPARLNVPEHIRIHHIDLAVELQSLVYFLKHYSMQEK

Specific function: Modulates transcription in response to changes in cellular NADH/NAD(+) redox state

COG id: COG2344

COG function: function code R; AT-rich DNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transcriptional regulatory rex family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): REX_BACLD (Q65N04)

Other databases:

- EMBL:   CP000002
- EMBL:   AE017333
- RefSeq:   YP_077845.1
- RefSeq:   YP_090253.1
- HSSP:   Q9X2V5
- ProteinModelPortal:   Q65N04
- SMR:   Q65N04
- STRING:   Q65N04
- EnsemblBacteria:   EBBACT00000054333
- EnsemblBacteria:   EBBACT00000061608
- GeneID:   3030747
- GeneID:   3100696
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi00618
- KEGG:   bli:BL00847
- NMPDR:   fig|279010.5.peg.833
- eggNOG:   COG2344
- GeneTree:   EBGT00050000002131
- HOGENOM:   HBG482264
- OMA:   TRGVGYD
- ProtClustDB:   PRK05472
- BioCyc:   BLIC279010-1:BLI00618-MONOMER
- BioCyc:   BLIC279010:BL00847-MONOMER
- GO:   GO:0005737
- GO:   GO:0006350
- HAMAP:   MF_01131
- InterPro:   IPR003781
- InterPro:   IPR016040
- InterPro:   IPR009718
- InterPro:   IPR022876
- InterPro:   IPR011991
- Gene3D:   G3DSA:3.40.50.720
- Gene3D:   G3DSA:1.10.10.10
- SMART:   SM00881

Pfam domain/function: PF02629 CoA_binding; PF06971 Put_DNA-bind_N

EC number: NA

Molecular weight: Translated: 24174; Mature: 24174

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMDHSKIPQATAKRLPLYYRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYFGAL
CCCCHHCCCHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
GKKGYGYNVNYLLSFFRKTLDQDETTNVTLIGVGNLGTAFLHYNFIKNNNTKIAMAFDIN
CCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEEECC
EEKIGTEVGGVPVYDLNKLEEHMTDDDIPVAILTVPAQAAQSITDRLVALGIKGILNFTP
HHHHCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCC
ARLNVPEHIRIHHIDLAVELQSLVYFLKHYSMQEK
CCCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNMDHSKIPQATAKRLPLYYRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYFGAL
CCCCHHCCCHHHHHHCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
GKKGYGYNVNYLLSFFRKTLDQDETTNVTLIGVGNLGTAFLHYNFIKNNNTKIAMAFDIN
CCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEEEEECCCEEEEEEEECC
EEKIGTEVGGVPVYDLNKLEEHMTDDDIPVAILTVPAQAAQSITDRLVALGIKGILNFTP
HHHHCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCC
ARLNVPEHIRIHHIDLAVELQSLVYFLKHYSMQEK
CCCCCCCEEEEEEEHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA