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The map label for this gene is ydcI [H]

Identifier: 52784382

GI number: 52784382

Start: 564861

End: 567023

Strand: Direct

Name: ydcI [H]

Synonym: BLi00562

Alternate gene names: 52784382

Gene position: 564861-567023 (Clockwise)

Preceding gene: 52784381

Following gene: 52784384

Centisome position: 13.38

GC content: 50.81

Gene sequence:

>2163_bases
ATGGATACTTTAGCGTCAATCGTCAAACAAATCGCAAAAGAAACGGGGCTTGCGCCAAAGCATGTCGAGAGTGTCATTCA
ATTATTAGAGGACGGCAACACCGTCCCCTTTATTGCGAGATACCGAAAAGAACAAACGGGCTCCATGGATGAAGTCCAAA
TACAAACTATCTCCGAACGCTGGGGATACATTCAGCATTTAAATCAGCGGAAAGACGAAGTCATCAGGCTGATCGATGAA
CAGGGCAAGCTGACCGGACAGCTGAAGCTGGATATAGAAAAAGCGGACAAGCTCCAGGAAGTTGAAGACTTATACAGACC
GTTTAAACAAAAACGAAAAACCAAGGCGACGATCGCCAAAAGCAAAGGGCTTGAACCTTTGGCTGATTTCATCATCTCGC
TCCCGCGTAATGAAGATGTAGCAGCCGAAGCCCGCAAGTACATAAATGAAGAAAAGGAAGTCATGAGCGCCGAAGAAGCG
CTTGAAGGAGCAAAGAACATACTGGCTGAACGGATCTCAGACGAACCGGAATACAGGAAGTGGATCAGGCAGGAGACTTT
TAAAAGAGGAACGCTGAAGTCCGCGGCAAAAGATGCCGAAGCGGATGAGAAGAAAATCTATGAAATGTATTATGAATACG
AAGAGCCGATTCAAAAAATCGTTCCTCATCGCGTACTCGCAGTTAACCGCGGCGAAAAAGAGGAGATTTTGAGAGCGTCG
GTCGAGCCGCCGGCAGACCGCATCCAAGCTTACTTGGAAAAACGGATTTTACAACAAAAGCAAACAAGTGCTCAAGATGT
CCTGAAAAGCGCGATCGAAGACGGCTATAAGCGCCTGATTCAGCCGTCAATCGAGAGGGAAATCAGAAAAGAATTGACGG
AAAAGGCGGAAGACCAAGCGATTCACATATTTGCCGAAAATCTGCGCAAGCTGCTGCTGCAGCCGCCGATGAAAGGAAAG
CTCGTTCTCGGCGTCGACCCGGCATTCCGCACAGGCTGCAAGCTGGCAGTCGTGGATGAGACGGGAAAGATGCTCAAGAT
CGACGTCATATACCCGCACCCTCCCGTCAATAAGAAAAGCGCCGCCATCGAAAAAGTAAAACGCATCATCGAAGACTTTC
AAATCGAGGTCATCGCAATCGGGAACGGAACGGCATCAAGAGAGACGGAACAGTTTATCGCCGATCTCTTGAAGGACATC
GACAGAAAGGTGTACTATCTGATCGTCAATGAAGCGGGAGCCAGCGTCTATTCGGCATCAGAGCTTGCGAGGGAAGAATT
CCCCGATCTGCAGGTTGAAGAACGGAGCGCCGTGTCGATCGCACGCAGACTCCAAGACCCGCTCGCCGAACTCGTCAAAA
TCGATCCCAAGTCGGTCGGGGTCGGCCAGTACCAGCACGATGTCAGCCAGAAAAAACTAAACGATTCGCTCCGCTTTGTC
GTGGAAACCGTCGTCAACCAGGTCGGCGTCAACGTGAATACTGCATCAGCCGCGCTCTTGCAATATGTGGCCGGACTATC
GAAAACAGTCGCGGCCAACATCGTCAAAAAACGGGATGAGATCGGAAAATTCACGAGCCGGAAAGAGCTGAAAGACATTC
CGCGCCTGGGCGCGAAAACGTATGAGCAATGCATCGGCTTTTTAAGGGTGCCTGACGGCGATGAACCGCTCGACCGGACA
GGCATCCACCCGGAGAGCTATAAAGAGACGAGAGAGCTCCTGAAAAAGCTGGGCCTTTCAACAGCCCAAATCGGCACAAA
AGAGCTTCAGGACAAAATCAACGAACTGAATATTTCCGAAGCAGCTGAACAGCTGGGGATCGGGGAAATCACCCTGAAAG
ACATTTGCGCCCAGCTGACGAGGCCTGAGCGCGATCCGAGGGATGAAGTCCCTAAACCGCTCTTAAAAACCGATGTGCTT
CAATTGGAGGACTTAAAAGAGGGGATGGAACTTCAGGGGACAGTGCGGAACGTCGTTGACTTCGGGGCGTTTGTCGACAT
CGGCGTGAAACAGGACGGGCTCGTCCACATTTCCAAGCTCAGCCATTCCTTCGTCAAGCATCCGCTCGACGTTGTGTCGG
TCGGGGACATCGTCACCGTATGGGTGGAAGATGTCGACGCTGCAAAAGGAAGGGTCTCCTTATCGATGGTAAAAGATCGA
TAG

Upstream 100 bases:

>100_bases
ATATCATTGGACAGCTTTTTTAAGGAAGCTGCCCTTTGATATAGGTGTTTTTCCGTTTCTTTTGGTACACTAAGAAGACA
ACATTCTTTTGGAGGCTACA

Downstream 100 bases:

>100_bases
GACTTGAAGTCAGCCCGCCGGAAGCTTTATTTTCCGGCGGGCTTATCTTTTACATCGCGATTTTCAACAGGATGCGGTGG
ACGACGCCTGCAATATGTGC

Product: YdcI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 720; Mature: 720

Protein sequence:

>720_residues
MDTLASIVKQIAKETGLAPKHVESVIQLLEDGNTVPFIARYRKEQTGSMDEVQIQTISERWGYIQHLNQRKDEVIRLIDE
QGKLTGQLKLDIEKADKLQEVEDLYRPFKQKRKTKATIAKSKGLEPLADFIISLPRNEDVAAEARKYINEEKEVMSAEEA
LEGAKNILAERISDEPEYRKWIRQETFKRGTLKSAAKDAEADEKKIYEMYYEYEEPIQKIVPHRVLAVNRGEKEEILRAS
VEPPADRIQAYLEKRILQQKQTSAQDVLKSAIEDGYKRLIQPSIEREIRKELTEKAEDQAIHIFAENLRKLLLQPPMKGK
LVLGVDPAFRTGCKLAVVDETGKMLKIDVIYPHPPVNKKSAAIEKVKRIIEDFQIEVIAIGNGTASRETEQFIADLLKDI
DRKVYYLIVNEAGASVYSASELAREEFPDLQVEERSAVSIARRLQDPLAELVKIDPKSVGVGQYQHDVSQKKLNDSLRFV
VETVVNQVGVNVNTASAALLQYVAGLSKTVAANIVKKRDEIGKFTSRKELKDIPRLGAKTYEQCIGFLRVPDGDEPLDRT
GIHPESYKETRELLKKLGLSTAQIGTKELQDKINELNISEAAEQLGIGEITLKDICAQLTRPERDPRDEVPKPLLKTDVL
QLEDLKEGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSHSFVKHPLDVVSVGDIVTVWVEDVDAAKGRVSLSMVKDR

Sequences:

>Translated_720_residues
MDTLASIVKQIAKETGLAPKHVESVIQLLEDGNTVPFIARYRKEQTGSMDEVQIQTISERWGYIQHLNQRKDEVIRLIDE
QGKLTGQLKLDIEKADKLQEVEDLYRPFKQKRKTKATIAKSKGLEPLADFIISLPRNEDVAAEARKYINEEKEVMSAEEA
LEGAKNILAERISDEPEYRKWIRQETFKRGTLKSAAKDAEADEKKIYEMYYEYEEPIQKIVPHRVLAVNRGEKEEILRAS
VEPPADRIQAYLEKRILQQKQTSAQDVLKSAIEDGYKRLIQPSIEREIRKELTEKAEDQAIHIFAENLRKLLLQPPMKGK
LVLGVDPAFRTGCKLAVVDETGKMLKIDVIYPHPPVNKKSAAIEKVKRIIEDFQIEVIAIGNGTASRETEQFIADLLKDI
DRKVYYLIVNEAGASVYSASELAREEFPDLQVEERSAVSIARRLQDPLAELVKIDPKSVGVGQYQHDVSQKKLNDSLRFV
VETVVNQVGVNVNTASAALLQYVAGLSKTVAANIVKKRDEIGKFTSRKELKDIPRLGAKTYEQCIGFLRVPDGDEPLDRT
GIHPESYKETRELLKKLGLSTAQIGTKELQDKINELNISEAAEQLGIGEITLKDICAQLTRPERDPRDEVPKPLLKTDVL
QLEDLKEGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSHSFVKHPLDVVSVGDIVTVWVEDVDAAKGRVSLSMVKDR
>Mature_720_residues
MDTLASIVKQIAKETGLAPKHVESVIQLLEDGNTVPFIARYRKEQTGSMDEVQIQTISERWGYIQHLNQRKDEVIRLIDE
QGKLTGQLKLDIEKADKLQEVEDLYRPFKQKRKTKATIAKSKGLEPLADFIISLPRNEDVAAEARKYINEEKEVMSAEEA
LEGAKNILAERISDEPEYRKWIRQETFKRGTLKSAAKDAEADEKKIYEMYYEYEEPIQKIVPHRVLAVNRGEKEEILRAS
VEPPADRIQAYLEKRILQQKQTSAQDVLKSAIEDGYKRLIQPSIEREIRKELTEKAEDQAIHIFAENLRKLLLQPPMKGK
LVLGVDPAFRTGCKLAVVDETGKMLKIDVIYPHPPVNKKSAAIEKVKRIIEDFQIEVIAIGNGTASRETEQFIADLLKDI
DRKVYYLIVNEAGASVYSASELAREEFPDLQVEERSAVSIARRLQDPLAELVKIDPKSVGVGQYQHDVSQKKLNDSLRFV
VETVVNQVGVNVNTASAALLQYVAGLSKTVAANIVKKRDEIGKFTSRKELKDIPRLGAKTYEQCIGFLRVPDGDEPLDRT
GIHPESYKETRELLKKLGLSTAQIGTKELQDKINELNISEAAEQLGIGEITLKDICAQLTRPERDPRDEVPKPLLKTDVL
QLEDLKEGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLSHSFVKHPLDVVSVGDIVTVWVEDVDAAKGRVSLSMVKDR

Specific function: Unknown

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=789, Percent_Identity=33.8403041825095, Blast_Score=408, Evalue=1e-113,
Organism=Homo sapiens, GI27597090, Length=637, Percent_Identity=24.1758241758242, Blast_Score=96, Evalue=1e-19,
Organism=Escherichia coli, GI87082262, Length=731, Percent_Identity=44.0492476060192, Blast_Score=565, Evalue=1e-162,
Organism=Escherichia coli, GI1787140, Length=75, Percent_Identity=50.6666666666667, Blast_Score=77, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17511129, Length=750, Percent_Identity=33.2, Blast_Score=286, Evalue=3e-77,
Organism=Caenorhabditis elegans, GI17552892, Length=312, Percent_Identity=27.2435897435897, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI62484314, Length=756, Percent_Identity=33.8624338624339, Blast_Score=400, Evalue=1e-111,
Organism=Drosophila melanogaster, GI24640080, Length=585, Percent_Identity=22.2222222222222, Blast_Score=82, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 81203; Mature: 81203

Theoretical pI: Translated: 5.85; Mature: 5.85

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLASIVKQIAKETGLAPKHVESVIQLLEDGNTVPFIARYRKEQTGSMDEVQIQTISER
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
WGYIQHLNQRKDEVIRLIDEQGKLTGQLKLDIEKADKLQEVEDLYRPFKQKRKTKATIAK
HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKGLEPLADFIISLPRNEDVAAEARKYINEEKEVMSAEEALEGAKNILAERISDEPEYRK
HCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
WIRQETFKRGTLKSAAKDAEADEKKIYEMYYEYEEPIQKIVPHRVLAVNRGEKEEILRAS
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCHHHHHHHC
VEPPADRIQAYLEKRILQQKQTSAQDVLKSAIEDGYKRLIQPSIEREIRKELTEKAEDQA
CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
IHIFAENLRKLLLQPPMKGKLVLGVDPAFRTGCKLAVVDETGKMLKIDVIYPHPPVNKKS
HHHHHHHHHHHHHCCCCCCCEEEECCHHHHCCCEEEEEECCCCEEEEEEECCCCCCCCHH
AAIEKVKRIIEDFQIEVIAIGNGTASRETEQFIADLLKDIDRKVYYLIVNEAGASVYSAS
HHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHH
ELAREEFPDLQVEERSAVSIARRLQDPLAELVKIDPKSVGVGQYQHDVSQKKLNDSLRFV
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
VETVVNQVGVNVNTASAALLQYVAGLSKTVAANIVKKRDEIGKFTSRKELKDIPRLGAKT
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
YEQCIGFLRVPDGDEPLDRTGIHPESYKETRELLKKLGLSTAQIGTKELQDKINELNISE
HHHHHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHCCHHH
AAEQLGIGEITLKDICAQLTRPERDPRDEVPKPLLKTDVLQLEDLKEGMELQGTVRNVVD
HHHHCCCCCCHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
FGAFVDIGVKQDGLVHISKLSHSFVKHPLDVVSVGDIVTVWVEDVDAAKGRVSLSMVKDR
HHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHCCCCEEEEEECCC
>Mature Secondary Structure
MDTLASIVKQIAKETGLAPKHVESVIQLLEDGNTVPFIARYRKEQTGSMDEVQIQTISER
CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
WGYIQHLNQRKDEVIRLIDEQGKLTGQLKLDIEKADKLQEVEDLYRPFKQKRKTKATIAK
HHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKGLEPLADFIISLPRNEDVAAEARKYINEEKEVMSAEEALEGAKNILAERISDEPEYRK
HCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
WIRQETFKRGTLKSAAKDAEADEKKIYEMYYEYEEPIQKIVPHRVLAVNRGEKEEILRAS
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCCHHHHHHHC
VEPPADRIQAYLEKRILQQKQTSAQDVLKSAIEDGYKRLIQPSIEREIRKELTEKAEDQA
CCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
IHIFAENLRKLLLQPPMKGKLVLGVDPAFRTGCKLAVVDETGKMLKIDVIYPHPPVNKKS
HHHHHHHHHHHHHCCCCCCCEEEECCHHHHCCCEEEEEECCCCEEEEEEECCCCCCCCHH
AAIEKVKRIIEDFQIEVIAIGNGTASRETEQFIADLLKDIDRKVYYLIVNEAGASVYSAS
HHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHH
ELAREEFPDLQVEERSAVSIARRLQDPLAELVKIDPKSVGVGQYQHDVSQKKLNDSLRFV
HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
VETVVNQVGVNVNTASAALLQYVAGLSKTVAANIVKKRDEIGKFTSRKELKDIPRLGAKT
HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
YEQCIGFLRVPDGDEPLDRTGIHPESYKETRELLKKLGLSTAQIGTKELQDKINELNISE
HHHHHHHEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHCCHHH
AAEQLGIGEITLKDICAQLTRPERDPRDEVPKPLLKTDVLQLEDLKEGMELQGTVRNVVD
HHHHCCCCCCHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
FGAFVDIGVKQDGLVHISKLSHSFVKHPLDVVSVGDIVTVWVEDVDAAKGRVSLSMVKDR
HHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]