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The map label for this gene is ydbB [H]

Identifier: 52784353

GI number: 52784353

Start: 539740

End: 540456

Strand: Direct

Name: ydbB [H]

Synonym: BLi00533

Alternate gene names: 52784353

Gene position: 539740-540456 (Clockwise)

Preceding gene: 52784351

Following gene: 52784354

Centisome position: 12.78

GC content: 49.37

Gene sequence:

>717_bases
ATGGATCGCAAAACGAATCTTCTTGAATTGACAAAGGAAGTCGCAGAAAAGCACGCCAATTTTCTTGTTTCGGAAGTGAA
CGACCATTGTATGCGAATTGCCGTTTTGGAGGGCGAATACGTATGGCATATCCATCCCGGCTCAGATGAACTGTTTATTG
TTTTGGAAGGGGAGCTGTTGATCGATTTTCAGGATCGCCCCACAGAAGTTCTGAAAGCGAATGATTCCCTGCTGATTCCG
AAAGGCGTCATTCACCGGACACGCGCTGATGTCAGGTCGGTTAACCTTTGTATAGAAAAAACTAATGCGGAAACCGTCCC
GTTCGCGGAAGGGAATGTGCTGAAGCTGATACGGTGCAAATCAGCCGAACAAAAGCTTCAAGCATTCAGCGAGGCGCAGG
CCAAATGGGCTCCGCTGCAAAACGTCAGCGGATTCATCAGGCAGTGGGGCGGATGGATGGAAACAGAAGACGGGCCGGAA
GCCGTCGTCCTGGCGCTTTGGAAATCGAAGCACGATTATTTGAACTTTATGGCGGAACATCATGATGAGATATATGAAAG
AACGCATCAGAAAGGCACATTCGAATCCATCAACATTACGCTGTTTGAAGATCCTGCCGAGATATCTGAAACGCTGCAGA
ACAATACGCCGGCTCCGGTACCGGAATGGACGGTAATGGGCAGCGGACGATTGCGCGATCCACACTCTCTTTCGTGA

Upstream 100 bases:

>100_bases
CGTTTTTTCACCAATATCCAACACTTTAAAAGGCGCACGCGCAAAAGTCAAATGGTAAAATAAGTTCTGGAGAAAATCAA
ATCAAAAGCGGGGGAAGCCG

Downstream 100 bases:

>100_bases
ATGTGCTATTTGTGTTTACTCTTTTTGAAATGTGGAATGTAAAAACCATAACACTTCAAAAGGAGGAATCAAAAATGGCA
AACAATAATGACGACAACAA

Product: YdbB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MDRKTNLLELTKEVAEKHANFLVSEVNDHCMRIAVLEGEYVWHIHPGSDELFIVLEGELLIDFQDRPTEVLKANDSLLIP
KGVIHRTRADVRSVNLCIEKTNAETVPFAEGNVLKLIRCKSAEQKLQAFSEAQAKWAPLQNVSGFIRQWGGWMETEDGPE
AVVLALWKSKHDYLNFMAEHHDEIYERTHQKGTFESINITLFEDPAEISETLQNNTPAPVPEWTVMGSGRLRDPHSLS

Sequences:

>Translated_238_residues
MDRKTNLLELTKEVAEKHANFLVSEVNDHCMRIAVLEGEYVWHIHPGSDELFIVLEGELLIDFQDRPTEVLKANDSLLIP
KGVIHRTRADVRSVNLCIEKTNAETVPFAEGNVLKLIRCKSAEQKLQAFSEAQAKWAPLQNVSGFIRQWGGWMETEDGPE
AVVLALWKSKHDYLNFMAEHHDEIYERTHQKGTFESINITLFEDPAEISETLQNNTPAPVPEWTVMGSGRLRDPHSLS
>Mature_238_residues
MDRKTNLLELTKEVAEKHANFLVSEVNDHCMRIAVLEGEYVWHIHPGSDELFIVLEGELLIDFQDRPTEVLKANDSLLIP
KGVIHRTRADVRSVNLCIEKTNAETVPFAEGNVLKLIRCKSAEQKLQAFSEAQAKWAPLQNVSGFIRQWGGWMETEDGPE
AVVLALWKSKHDYLNFMAEHHDEIYERTHQKGTFESINITLFEDPAEISETLQNNTPAPVPEWTVMGSGRLRDPHSLS

Specific function: Unknown

COG id: COG0662

COG function: function code G; Mannose-6-phosphate isomerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the SchB/CurC family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR019780
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2 [H]

EC number: NA

Molecular weight: Translated: 27083; Mature: 27083

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: PS00725 GERMIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRKTNLLELTKEVAEKHANFLVSEVNDHCMRIAVLEGEYVWHIHPGSDELFIVLEGELL
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEECCCCEEEEEEECEEE
IDFQDRPTEVLKANDSLLIPKGVIHRTRADVRSVNLCIEKTNAETVPFAEGNVLKLIRCK
EEECCCCHHHHCCCCCEECCHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCEEEEEECC
SAEQKLQAFSEAQAKWAPLQNVSGFIRQWGGWMETEDGPEAVVLALWKSKHDYLNFMAEH
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHCCHHHHHHHHHH
HDEIYERTHQKGTFESINITLFEDPAEISETLQNNTPAPVPEWTVMGSGRLRDPHSLS
HHHHHHHHCCCCCEEEEEEEEEECHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCC
>Mature Secondary Structure
MDRKTNLLELTKEVAEKHANFLVSEVNDHCMRIAVLEGEYVWHIHPGSDELFIVLEGELL
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEECCCCEEEEEEECEEE
IDFQDRPTEVLKANDSLLIPKGVIHRTRADVRSVNLCIEKTNAETVPFAEGNVLKLIRCK
EEECCCCHHHHCCCCCEECCHHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCEEEEEECC
SAEQKLQAFSEAQAKWAPLQNVSGFIRQWGGWMETEDGPEAVVLALWKSKHDYLNFMAEH
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEEHHCCHHHHHHHHHH
HDEIYERTHQKGTFESINITLFEDPAEISETLQNNTPAPVPEWTVMGSGRLRDPHSLS
HHHHHHHHCCCCCEEEEEEEEEECHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]