| Definition | Bacillus licheniformis ATCC 14580, complete genome. |
|---|---|
| Accession | NC_006322 |
| Length | 4,222,645 |
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The map label for this gene is ydaD [H]
Identifier: 52784329
GI number: 52784329
Start: 516427
End: 517296
Strand: Direct
Name: ydaD [H]
Synonym: BLi00509
Alternate gene names: 52784329
Gene position: 516427-517296 (Clockwise)
Preceding gene: 52784328
Following gene: 52784330
Centisome position: 12.23
GC content: 51.84
Gene sequence:
>870_bases ATGGATTTGCGCAATCAGCAGACAAACGGGCAGCCGGCGCAGACGCAAGACCGCCAGCCCGGCATCGAAAGCGTCATGAA TCCGCGTCCGATCTATGAGGATGAAAATTACAAAGGAACGGATAAACTGAAAGGAAAGGTCGCGCTGATCACAGGAGGCG ACAGCGGAATCGGCAGAGCTGTTGCCGTTGCCTATGCTAAAGAAGGCGCGGACATCTCGATCGTCTACTTGAATGAACAC GAAGACGCTCAGGAGACGAAAGCGCGCGTTGAAAAAGAGGGCGTCAAATGCCTGCTGCTTCCCGGCGATGTCAGGGATGA AGCTTTCTGCAATGACGCGGTTGAGCAGACGGTGAAGGAGCTGGGCCGTCTTGATATTCTTGTCAATAATGCGGCCGAAC AGCATCCTAAAGACAGCATTAAAGAGATTTCCAGTGAACAGCTCGAGAAAACATTTAAAACAAATTTCTTCTCTTATTTC TACTTTACAAAAAAAGCGATTGATTATCTGGAGCCGGGCAGCGCGATCATCAATACAACATCGATCAACCCTTACCGGGG CAATCCGCAGCTGATTGACTACACGGCAACAAAAGGGGCGATCAATGCGTTTACACGGTCGATGTCACAGGCGCTCGTCA AAGACGGCATCCGTGTCAATGCCGTTGCACCGGGACCGATTTGGACGCCGCTGATCCCGTCAACGTTTTCAGGGGAGGAA GTGGCGAAGTTCGGTACAGATACACCGATGGGCCGTCCAGGTCAGCCGGTCGACCATGTGGGCTGCTATGTGCTTTTAGC ATCTGACGATTCTTCGTATATGACAGGGCAGACCCTCCACGTCAACGGCGGAGACTTTATCACGACATAA
Upstream 100 bases:
>100_bases AACCCGGGGCTTTCTTCATTTTTATCGCACATGGTCATGTTTAAACAAAAATTTCTCCGGTTAAAAGTCTAGTAACATCA GCTAAAGGGAGGAATCACAA
Downstream 100 bases:
>100_bases AAGGGGGAAGCTCGTGTGAAGGTGACAAAGGAAGATGTAATTGAATACTACGAGAAAGCGGGCATTGTGCTGAACGACGA TGATAAAGAAAACATCCAAA
Product: short chain dehydrogenase
Products: NA
Alternate protein names: GSP39 [H]
Number of amino acids: Translated: 289; Mature: 289
Protein sequence:
>289_residues MDLRNQQTNGQPAQTQDRQPGIESVMNPRPIYEDENYKGTDKLKGKVALITGGDSGIGRAVAVAYAKEGADISIVYLNEH EDAQETKARVEKEGVKCLLLPGDVRDEAFCNDAVEQTVKELGRLDILVNNAAEQHPKDSIKEISSEQLEKTFKTNFFSYF YFTKKAIDYLEPGSAIINTTSINPYRGNPQLIDYTATKGAINAFTRSMSQALVKDGIRVNAVAPGPIWTPLIPSTFSGEE VAKFGTDTPMGRPGQPVDHVGCYVLLASDDSSYMTGQTLHVNGGDFITT
Sequences:
>Translated_289_residues MDLRNQQTNGQPAQTQDRQPGIESVMNPRPIYEDENYKGTDKLKGKVALITGGDSGIGRAVAVAYAKEGADISIVYLNEH EDAQETKARVEKEGVKCLLLPGDVRDEAFCNDAVEQTVKELGRLDILVNNAAEQHPKDSIKEISSEQLEKTFKTNFFSYF YFTKKAIDYLEPGSAIINTTSINPYRGNPQLIDYTATKGAINAFTRSMSQALVKDGIRVNAVAPGPIWTPLIPSTFSGEE VAKFGTDTPMGRPGQPVDHVGCYVLLASDDSSYMTGQTLHVNGGDFITT >Mature_289_residues MDLRNQQTNGQPAQTQDRQPGIESVMNPRPIYEDENYKGTDKLKGKVALITGGDSGIGRAVAVAYAKEGADISIVYLNEH EDAQETKARVEKEGVKCLLLPGDVRDEAFCNDAVEQTVKELGRLDILVNNAAEQHPKDSIKEISSEQLEKTFKTNFFSYF YFTKKAIDYLEPGSAIINTTSINPYRGNPQLIDYTATKGAINAFTRSMSQALVKDGIRVNAVAPGPIWTPLIPSTFSGEE VAKFGTDTPMGRPGQPVDHVGCYVLLASDDSSYMTGQTLHVNGGDFITT
Specific function: Unknown
COG id: COG1028
COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI59889578, Length=234, Percent_Identity=32.0512820512821, Blast_Score=109, Evalue=3e-24, Organism=Homo sapiens, GI32483357, Length=250, Percent_Identity=31.6, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI15277342, Length=260, Percent_Identity=31.1538461538462, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI31542939, Length=210, Percent_Identity=34.7619047619048, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI10190704, Length=266, Percent_Identity=30.0751879699248, Blast_Score=99, Evalue=3e-21, Organism=Homo sapiens, GI40254992, Length=241, Percent_Identity=30.7053941908714, Blast_Score=99, Evalue=4e-21, Organism=Homo sapiens, GI19923817, Length=270, Percent_Identity=27.7777777777778, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI4758504, Length=256, Percent_Identity=29.6875, Blast_Score=85, Evalue=8e-17, Organism=Homo sapiens, GI224922801, Length=173, Percent_Identity=35.8381502890173, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI7705925, Length=252, Percent_Identity=30.5555555555556, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI210032110, Length=185, Percent_Identity=30.8108108108108, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI5031737, Length=250, Percent_Identity=27.6, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=27.2727272727273, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI7706318, Length=212, Percent_Identity=25.9433962264151, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI40254986, Length=199, Percent_Identity=30.6532663316583, Blast_Score=72, Evalue=8e-13, Organism=Homo sapiens, GI142976729, Length=201, Percent_Identity=27.8606965174129, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI66933014, Length=251, Percent_Identity=27.8884462151394, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI83715985, Length=256, Percent_Identity=27.34375, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI33667109, Length=195, Percent_Identity=27.6923076923077, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI1789378, Length=288, Percent_Identity=44.7916666666667, Blast_Score=246, Evalue=1e-66, Organism=Escherichia coli, GI2367175, Length=251, Percent_Identity=32.2709163346614, Blast_Score=130, Evalue=9e-32, Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=33.6032388663968, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1788459, Length=246, Percent_Identity=32.9268292682927, Blast_Score=118, Evalue=4e-28, Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=32.6612903225806, Blast_Score=114, Evalue=6e-27, Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=30.2040816326531, Blast_Score=110, Evalue=9e-26, Organism=Escherichia coli, GI87082160, Length=248, Percent_Identity=33.0645161290323, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1790717, Length=252, Percent_Identity=30.5555555555556, Blast_Score=107, Evalue=7e-25, Organism=Escherichia coli, GI87082100, Length=253, Percent_Identity=29.2490118577075, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI2367365, Length=245, Percent_Identity=27.3469387755102, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI1787545, Length=253, Percent_Identity=26.8774703557312, Blast_Score=75, Evalue=5e-15, Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=24.9027237354086, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787526, Length=252, Percent_Identity=25.7936507936508, Blast_Score=65, Evalue=4e-12, Organism=Caenorhabditis elegans, GI17531453, Length=263, Percent_Identity=34.9809885931559, Blast_Score=122, Evalue=2e-28, Organism=Caenorhabditis elegans, GI193204405, Length=263, Percent_Identity=33.4600760456274, Blast_Score=122, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17561402, Length=250, Percent_Identity=33.6, Blast_Score=119, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=33.587786259542, Blast_Score=119, Evalue=2e-27, Organism=Caenorhabditis elegans, GI17560150, Length=261, Percent_Identity=32.9501915708812, Blast_Score=118, Evalue=4e-27, Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=32.4427480916031, Blast_Score=117, Evalue=5e-27, Organism=Caenorhabditis elegans, GI17559104, Length=257, Percent_Identity=34.2412451361868, Blast_Score=114, Evalue=6e-26, Organism=Caenorhabditis elegans, GI25147288, Length=253, Percent_Identity=35.9683794466403, Blast_Score=114, Evalue=6e-26, Organism=Caenorhabditis elegans, GI17551412, Length=263, Percent_Identity=33.4600760456274, Blast_Score=114, Evalue=7e-26, Organism=Caenorhabditis elegans, GI17562990, Length=260, Percent_Identity=33.4615384615385, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17563726, Length=262, Percent_Identity=32.4427480916031, Blast_Score=110, Evalue=6e-25, Organism=Caenorhabditis elegans, GI17560220, Length=267, Percent_Identity=32.2097378277154, Blast_Score=110, Evalue=1e-24, Organism=Caenorhabditis elegans, GI72000259, Length=261, Percent_Identity=29.8850574712644, Blast_Score=107, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17538480, Length=272, Percent_Identity=32.3529411764706, Blast_Score=104, Evalue=6e-23, Organism=Caenorhabditis elegans, GI17562904, Length=263, Percent_Identity=31.1787072243346, Blast_Score=103, Evalue=9e-23, Organism=Caenorhabditis elegans, GI17560676, Length=249, Percent_Identity=28.5140562248996, Blast_Score=101, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17536025, Length=258, Percent_Identity=30.6201550387597, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=31.9548872180451, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17560332, Length=266, Percent_Identity=32.7067669172932, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI71994600, Length=253, Percent_Identity=28.8537549407115, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17565030, Length=263, Percent_Identity=31.9391634980989, Blast_Score=94, Evalue=1e-19, Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=29.0566037735849, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17538486, Length=262, Percent_Identity=29.7709923664122, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17538182, Length=261, Percent_Identity=29.5019157088123, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17555706, Length=245, Percent_Identity=30.6122448979592, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI71994604, Length=252, Percent_Identity=29.3650793650794, Blast_Score=91, Evalue=5e-19, Organism=Caenorhabditis elegans, GI17536651, Length=252, Percent_Identity=27.7777777777778, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI71982365, Length=201, Percent_Identity=29.8507462686567, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17561272, Length=257, Percent_Identity=29.5719844357977, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI115534694, Length=262, Percent_Identity=29.0076335877863, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI17564282, Length=189, Percent_Identity=31.7460317460317, Blast_Score=71, Evalue=7e-13, Organism=Caenorhabditis elegans, GI193203117, Length=223, Percent_Identity=29.5964125560538, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193203115, Length=222, Percent_Identity=29.2792792792793, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17508651, Length=251, Percent_Identity=27.0916334661355, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17567345, Length=214, Percent_Identity=28.0373831775701, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=222, Percent_Identity=29.7297297297297, Blast_Score=82, Evalue=9e-17, Organism=Saccharomyces cerevisiae, GI6324126, Length=253, Percent_Identity=27.2727272727273, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6322227, Length=197, Percent_Identity=29.4416243654822, Blast_Score=66, Evalue=7e-12, Organism=Saccharomyces cerevisiae, GI6322226, Length=211, Percent_Identity=27.4881516587678, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI21357041, Length=248, Percent_Identity=32.6612903225806, Blast_Score=118, Evalue=4e-27, Organism=Drosophila melanogaster, GI24644339, Length=247, Percent_Identity=33.6032388663968, Blast_Score=117, Evalue=7e-27, Organism=Drosophila melanogaster, GI28571526, Length=248, Percent_Identity=34.6774193548387, Blast_Score=117, Evalue=9e-27, Organism=Drosophila melanogaster, GI21355319, Length=251, Percent_Identity=29.8804780876494, Blast_Score=112, Evalue=4e-25, Organism=Drosophila melanogaster, GI23397609, Length=252, Percent_Identity=29.3650793650794, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=32.8, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI24644337, Length=250, Percent_Identity=34.4, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24580925, Length=216, Percent_Identity=29.1666666666667, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI17737361, Length=256, Percent_Identity=26.171875, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24643142, Length=245, Percent_Identity=29.3877551020408, Blast_Score=76, Evalue=3e-14, Organism=Drosophila melanogaster, GI116007236, Length=213, Percent_Identity=26.2910798122066, Blast_Score=68, Evalue=8e-12, Organism=Drosophila melanogaster, GI24641232, Length=211, Percent_Identity=25.5924170616114, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI21357673, Length=196, Percent_Identity=27.5510204081633, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 31574; Mature: 31574
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLRNQQTNGQPAQTQDRQPGIESVMNPRPIYEDENYKGTDKLKGKVALITGGDSGIGRA CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCE VAVAYAKEGADISIVYLNEHEDAQETKARVEKEGVKCLLLPGDVRDEAFCNDAVEQTVKE EEEEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHH LGRLDILVNNAAEQHPKDSIKEISSEQLEKTFKTNFFSYFYFTKKAIDYLEPGSAIINTT HHCEEEEECCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHCCCCCEEEEEC SINPYRGNPQLIDYTATKGAINAFTRSMSQALVKDGIRVNAVAPGPIWTPLIPSTFSGEE CCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHH VAKFGTDTPMGRPGQPVDHVGCYVLLASDDSSYMTGQTLHVNGGDFITT HHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCEEEECCCCEECC >Mature Secondary Structure MDLRNQQTNGQPAQTQDRQPGIESVMNPRPIYEDENYKGTDKLKGKVALITGGDSGIGRA CCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCE VAVAYAKEGADISIVYLNEHEDAQETKARVEKEGVKCLLLPGDVRDEAFCNDAVEQTVKE EEEEEECCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHH LGRLDILVNNAAEQHPKDSIKEISSEQLEKTFKTNFFSYFYFTKKAIDYLEPGSAIINTT HHCEEEEECCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHCCCCCEEEEEC SINPYRGNPQLIDYTATKGAINAFTRSMSQALVKDGIRVNAVAPGPIWTPLIPSTFSGEE CCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHH VAKFGTDTPMGRPGQPVDHVGCYVLLASDDSSYMTGQTLHVNGGDFITT HHHCCCCCCCCCCCCCCCCCCEEEEEECCCCCEECCCEEEECCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377; 9298659 [H]