Click here to switch to the map view.

The map label for this gene is ycsD [H]

Identifier: 52784310

GI number: 52784310

Start: 497004

End: 497225

Strand: Direct

Name: ycsD [H]

Synonym: BLi00490

Alternate gene names: 52784310

Gene position: 497004-497225 (Clockwise)

Preceding gene: 52784309

Following gene: 52784311

Centisome position: 11.77

GC content: 46.4

Gene sequence:

>222_bases
TTGAAAGAACCGGCTGAAATCGGCTTTCTGTCTTCGGTGAAAAAAGCCGAATGCACCGGCAAGGCCGTTGTGGGAGACAA
ACTTGATCTATACTTTGAAGTTTCCCGCTATAAACGGGGGTTTTTATTCGGCAAAGGAACCGCCTCAGTAAACGGAAAAC
CTGCAGTGAAAGCAGAGATCGGAATTTTTATGGAGCAAAGTGAAAGCGGGGGAGAAGATTGA

Upstream 100 bases:

>100_bases
AATTCATAACGGAAAACGACTGGTTCATCACCGAAAATCAAAAGGAAATGCCATTTTCATCTTAATAGAAGCGCTGGCTC
AGACCGCAGCATTTACTGCG

Downstream 100 bases:

>100_bases
TAGAAATAAAGCCTGTCGCGTTTGTGGAAAACTTGCGGACTTTCCCGAAGGATGATCATTGGGGCGATGTGATTTCTGAA
ATTAAGTTGGCTGAAGGCAT

Product: YcsD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 73; Mature: 73

Protein sequence:

>73_residues
MKEPAEIGFLSSVKKAECTGKAVVGDKLDLYFEVSRYKRGFLFGKGTASVNGKPAVKAEIGIFMEQSESGGED

Sequences:

>Translated_73_residues
MKEPAEIGFLSSVKKAECTGKAVVGDKLDLYFEVSRYKRGFLFGKGTASVNGKPAVKAEIGIFMEQSESGGED
>Mature_73_residues
MKEPAEIGFLSSVKKAECTGKAVVGDKLDLYFEVSRYKRGFLFGKGTASVNGKPAVKAEIGIFMEQSESGGED

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the thioester dehydratase family. FabZ subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013114 [H]

Pfam domain/function: PF07977 FabA [H]

EC number: NA

Molecular weight: Translated: 7835; Mature: 7835

Theoretical pI: Translated: 6.66; Mature: 6.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKEPAEIGFLSSVKKAECTGKAVVGDKLDLYFEVSRYKRGFLFGKGTASVNGKPAVKAEI
CCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCCEEEEECCCCCCCCCCCEEEEE
GIFMEQSESGGED
EEEEECCCCCCCC
>Mature Secondary Structure
MKEPAEIGFLSSVKKAECTGKAVVGDKLDLYFEVSRYKRGFLFGKGTASVNGKPAVKAEI
CCCCCCCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCCEEEEECCCCCCCCCCCEEEEE
GIFMEQSESGGED
EEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377; 10568751 [H]