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The map label for this gene is gerKA [H]

Identifier: 52784273

GI number: 52784273

Start: 453241

End: 454914

Strand: Direct

Name: gerKA [H]

Synonym: BLi00453

Alternate gene names: 52784273

Gene position: 453241-454914 (Clockwise)

Preceding gene: 52784271

Following gene: 52784274

Centisome position: 10.73

GC content: 47.49

Gene sequence:

>1674_bases
ATGAAAAACGAAAAGGGGATTCTGACAGCCATGCCATTCTTTTTTAAAGGTCGTCATCAAAAAGATAACAAACAAGAATC
TCTAATGAGCGGAGATAAGAACCCGGAAACCGTAAAGTTGTCTGGGTTTGTGCGTCCCTTGCTTGCCGAAAACCTGAGCC
TGATTAAAGAAATGACCGGAAACAGCTCCGATATTGTCATCCGCAAGTTAAAAACGGGCGCTGGCGAAAAAATTGAAATA
GCCGTCGTTTATGTCGGCGGCATTACAGATGAGAAAGCGATTCACGATTTTTTGCTGGAATCGATCATGAACTCCGAAGA
ATTGGCGGAAAAGGAGTACGGCAGGGAGGTTCTTGAGACGATTGCAGGTGATGCCGTTGCACTGGGCGGTGTCGAAAAAG
AAAAGCGGTTGGACAAAGTGCTTGAATCTTTGATGGCAGGAAATACGATCATTTTGGCAGAGGAGACGGCAGAAGCTGTT
ATTACGACCACGAAAGGCGGAGAAAAGCGCTCGATCAAGGAGCCTGAAAATCAGCAGGCATTCCGCGGTTCACGTGAAGG
ATTTATCGAAGCGCTCGACACGAATATTTCTTTGGTGCGCAGAATTATTAAAAACCCGAATCTTTGGGTTGAAAAAACGA
CGATGGGAAGCGTCACAAAAACCGATGTGGCGATCATGTATATCAATGGAATATGCGACCCGAAAGCGGTGAAAGAAGTC
AAAAAAAGGATGGAAAGCATTGAGATCGACAGCATCCTTGAATCGGGCTACATTGAACAGTTTATTGAAGACACCGTATT
TACGACCTTTCCGACGGTATATCATACTGAAAGGCCGGATATGGTCGCAGGGAATCTGCTTGAAGGAAGAATCGCCATCT
TTGTTGACGGTACACCGTTTGTCCTGCTTGTCCCTGCCGTTTTTATTCAATTTTTTCAATCTGTTGAGGATTACTATTCA
CGCTTTGACATTGCGACATTCATCCGCTTTTTGCGCGTATTGATCTTCTTTATTTCGCTGATTGCGCCTGCCGTCTACGT
CGGTGCGACGACTTTTCACAAGGAAATGATCCCGACGGAGCTTTTGGTCGTAATTGCCGCGCAGCGTGAAATCGTGCCGT
TCCCGGCTGTGGTCGAAGCCATGATCATGGAAATTTCGTTTGAAATTTTGCGGGAGGCGGGCATCCGGCTTCCGAAAGCG
ATAGGTTCAGCCGTTTCGATTGTGGGAGCCATTGTCATTGGGCAGGCGGCGGTTCAGGCCGGGATTGTGTCGCCGGCGAT
GGTCATCATCGTAGCGATCACAGCGATTTCAAGTTTTGCTACACCTTCTTTCTCCATGGCGATTTCCGCCCGGCTCGTCC
GGTTTTTCTTCATATTAGCCGCGGCGACGACGGGTTTTTACGGCATTATTCTTGGACTGATCATCATGTTTGTCCATTTA
TGCAGCCTGCGTTCCTTCGGTGTTCCATATATGACTCCTTTTGCGCCGTTTATTTTGAAAAACTGGGGCGACGCCATCGT
TCGTCTGCCTTGGTGGACACATGAGAAGCGGCCTGAACTGATCGGCAATGACAATAAGGTGCGCCAAGGAGAATACCAGA
AACCCGAGCCCCCGGATTCAGGCGATATGAAGACAAAACAAGAAGATGGTGATCCAAATGAAACGAATCGTTAA

Upstream 100 bases:

>100_bases
TTTCAACTTTGCACCACTCTCCGTTCCCCGTTATTTTTTCTCCTTTCATAAAGCACTATTCACCCGGGAATAGTATAAAT
GTGCTTGCGCAAGGAAAAAT

Downstream 100 bases:

>100_bases
AATTGTGCTCCTACTTGCCGCCATTGTCCTTCTTCAAGGGTGCTGGGATAAAAGAGAGCTGACAGATCTGCTGCTGATCA
CTGCCATCGGTATTGATAAA

Product: GerKA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 557; Mature: 557

Protein sequence:

>557_residues
MKNEKGILTAMPFFFKGRHQKDNKQESLMSGDKNPETVKLSGFVRPLLAENLSLIKEMTGNSSDIVIRKLKTGAGEKIEI
AVVYVGGITDEKAIHDFLLESIMNSEELAEKEYGREVLETIAGDAVALGGVEKEKRLDKVLESLMAGNTIILAEETAEAV
ITTTKGGEKRSIKEPENQQAFRGSREGFIEALDTNISLVRRIIKNPNLWVEKTTMGSVTKTDVAIMYINGICDPKAVKEV
KKRMESIEIDSILESGYIEQFIEDTVFTTFPTVYHTERPDMVAGNLLEGRIAIFVDGTPFVLLVPAVFIQFFQSVEDYYS
RFDIATFIRFLRVLIFFISLIAPAVYVGATTFHKEMIPTELLVVIAAQREIVPFPAVVEAMIMEISFEILREAGIRLPKA
IGSAVSIVGAIVIGQAAVQAGIVSPAMVIIVAITAISSFATPSFSMAISARLVRFFFILAAATTGFYGIILGLIIMFVHL
CSLRSFGVPYMTPFAPFILKNWGDAIVRLPWWTHEKRPELIGNDNKVRQGEYQKPEPPDSGDMKTKQEDGDPNETNR

Sequences:

>Translated_557_residues
MKNEKGILTAMPFFFKGRHQKDNKQESLMSGDKNPETVKLSGFVRPLLAENLSLIKEMTGNSSDIVIRKLKTGAGEKIEI
AVVYVGGITDEKAIHDFLLESIMNSEELAEKEYGREVLETIAGDAVALGGVEKEKRLDKVLESLMAGNTIILAEETAEAV
ITTTKGGEKRSIKEPENQQAFRGSREGFIEALDTNISLVRRIIKNPNLWVEKTTMGSVTKTDVAIMYINGICDPKAVKEV
KKRMESIEIDSILESGYIEQFIEDTVFTTFPTVYHTERPDMVAGNLLEGRIAIFVDGTPFVLLVPAVFIQFFQSVEDYYS
RFDIATFIRFLRVLIFFISLIAPAVYVGATTFHKEMIPTELLVVIAAQREIVPFPAVVEAMIMEISFEILREAGIRLPKA
IGSAVSIVGAIVIGQAAVQAGIVSPAMVIIVAITAISSFATPSFSMAISARLVRFFFILAAATTGFYGIILGLIIMFVHL
CSLRSFGVPYMTPFAPFILKNWGDAIVRLPWWTHEKRPELIGNDNKVRQGEYQKPEPPDSGDMKTKQEDGDPNETNR
>Mature_557_residues
MKNEKGILTAMPFFFKGRHQKDNKQESLMSGDKNPETVKLSGFVRPLLAENLSLIKEMTGNSSDIVIRKLKTGAGEKIEI
AVVYVGGITDEKAIHDFLLESIMNSEELAEKEYGREVLETIAGDAVALGGVEKEKRLDKVLESLMAGNTIILAEETAEAV
ITTTKGGEKRSIKEPENQQAFRGSREGFIEALDTNISLVRRIIKNPNLWVEKTTMGSVTKTDVAIMYINGICDPKAVKEV
KKRMESIEIDSILESGYIEQFIEDTVFTTFPTVYHTERPDMVAGNLLEGRIAIFVDGTPFVLLVPAVFIQFFQSVEDYYS
RFDIATFIRFLRVLIFFISLIAPAVYVGATTFHKEMIPTELLVVIAAQREIVPFPAVVEAMIMEISFEILREAGIRLPKA
IGSAVSIVGAIVIGQAAVQAGIVSPAMVIIVAITAISSFATPSFSMAISARLVRFFFILAAATTGFYGIILGLIIMFVHL
CSLRSFGVPYMTPFAPFILKNWGDAIVRLPWWTHEKRPELIGNDNKVRQGEYQKPEPPDSGDMKTKQEDGDPNETNR

Specific function: Involved in the germination response to the combination of glucose, fructose, L-asparagine, and KCl [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gerABKA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004995 [H]

Pfam domain/function: PF03323 GerA [H]

EC number: NA

Molecular weight: Translated: 61737; Mature: 61737

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNEKGILTAMPFFFKGRHQKDNKQESLMSGDKNPETVKLSGFVRPLLAENLSLIKEMTG
CCCCCCCEEECHHHHCCCCCCCCHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCC
NSSDIVIRKLKTGAGEKIEIAVVYVGGITDEKAIHDFLLESIMNSEELAEKEYGREVLET
CCCCEEEEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
IAGDAVALGGVEKEKRLDKVLESLMAGNTIILAEETAEAVITTTKGGEKRSIKEPENQQA
HCCCCEEECCCHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCHHH
FRGSREGFIEALDTNISLVRRIIKNPNLWVEKTTMGSVTKTDVAIMYINGICDPKAVKEV
HCCCHHHHHHHHCCCHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEECCCCCHHHHHHH
KKRMESIEIDSILESGYIEQFIEDTVFTTFPTVYHTERPDMVAGNLLEGRIAIFVDGTPF
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHCCCCCCCEEEEEECCCCH
VLLVPAVFIQFFQSVEDYYSRFDIATFIRFLRVLIFFISLIAPAVYVGATTFHKEMIPTE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLVVIAAQREIVPFPAVVEAMIMEISFEILREAGIRLPKAIGSAVSIVGAIVIGQAAVQA
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GIVSPAMVIIVAITAISSFATPSFSMAISARLVRFFFILAAATTGFYGIILGLIIMFVHL
HCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CSLRSFGVPYMTPFAPFILKNWGDAIVRLPWWTHEKRPELIGNDNKVRQGEYQKPEPPDS
HHHHHCCCCCCCHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GDMKTKQEDGDPNETNR
CCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKNEKGILTAMPFFFKGRHQKDNKQESLMSGDKNPETVKLSGFVRPLLAENLSLIKEMTG
CCCCCCCEEECHHHHCCCCCCCCHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCC
NSSDIVIRKLKTGAGEKIEIAVVYVGGITDEKAIHDFLLESIMNSEELAEKEYGREVLET
CCCCEEEEEECCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
IAGDAVALGGVEKEKRLDKVLESLMAGNTIILAEETAEAVITTTKGGEKRSIKEPENQQA
HCCCCEEECCCHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCHHH
FRGSREGFIEALDTNISLVRRIIKNPNLWVEKTTMGSVTKTDVAIMYINGICDPKAVKEV
HCCCHHHHHHHHCCCHHHHHHHHCCCCCEEEECCCCCCCCCCEEEEEECCCCCHHHHHHH
KKRMESIEIDSILESGYIEQFIEDTVFTTFPTVYHTERPDMVAGNLLEGRIAIFVDGTPF
HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHCCCCCCCEEEEEECCCCH
VLLVPAVFIQFFQSVEDYYSRFDIATFIRFLRVLIFFISLIAPAVYVGATTFHKEMIPTE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLVVIAAQREIVPFPAVVEAMIMEISFEILREAGIRLPKAIGSAVSIVGAIVIGQAAVQA
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
GIVSPAMVIIVAITAISSFATPSFSMAISARLVRFFFILAAATTGFYGIILGLIIMFVHL
HCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CSLRSFGVPYMTPFAPFILKNWGDAIVRLPWWTHEKRPELIGNDNKVRQGEYQKPEPPDS
HHHHHCCCCCCCHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GDMKTKQEDGDPNETNR
CCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]