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The map label for this gene is xylH [H]

Identifier: 52784264

GI number: 52784264

Start: 441938

End: 443149

Strand: Direct

Name: xylH [H]

Synonym: BLi00444

Alternate gene names: 52784264

Gene position: 441938-443149 (Clockwise)

Preceding gene: 52784263

Following gene: 52784267

Centisome position: 10.47

GC content: 49.34

Gene sequence:

>1212_bases
ATGCAGACACCGGTGCAAACGGATAAAGACCGCGCTCAGCCCGGCTACTTTCAGCTGTTTCGCGATATGTATAAGCAGAA
TATCCGGAAATACAGCATGGTCATTGCGCTCGTGTTTATTATGCTGCTGTTTCAAATATTGACAGACGGAATTTTGCTGA
GACCGCTGAACATTACGAACCTGATTTTGCAAAACAGCTACATTCTCATTTTAGCGATTGGGATGATGCTCGTCATCATC
ACGGGACACATTGATCTATCAGTCGGTTCAGTCGCCGCTTTTGTCGGCGCCGTCTCCGCGATGATGATCATTGAAAACGA
TATGCCGCTGTTTGCGGCGGTCGTCCTGTCGTTGCTTCTGGGAGCGGCAATCGGCGCCTGGCAGGGTTTTTGGATCGCTT
ATGTCAAGATTCCGGCCTTCATCGTGACGCTGGCGGGAATGCTTTTGTTCAGAGGGCTCACGATGATCGTGCTGGAGGGG
AAATCGATCGCTCCGTTTCCTGTGTCCTTCCAAAAAATGGCGTCCGGTTTTATTCCGGACTGGCTGAACGGAGGCACGTT
CCATTTGACGACGATTGTCGCCGGAGCGGGTGTGTCGATTCTTTATCTCGTATATCAGCTTCAGCAGAGAAACATGCAGA
AGAAATTCCAATTTGACTTGCAGGGAAAAGGTCTGTTTACAGTTAAGGTGTTTTTTATCATCGCCATTATCAACCTTTTT
ACCTACATTCTCGCGACTTATGAAGGTATACCTCTCATTTTGATCACATTGTTCGTCTTAATCGCCGGGTATACATTCGT
TATGAAAAAAACCGTCATCGGGCGGAGAATCTACGCGATCGGCGGCAATGAAAAAGCAGCCGAGCTTTCAGGAATCAAAA
CAAAACGGCTCACCTTTATGGTCTTCGTCAATATGGGCGTCTTAGCAGCCCTTTCAGGCTTGATTTTTGCCGCCCGTCTA
AACGCGGCCACTCCGAAAGCAGGAAACCTGTTTGAACTTGACGCCATTGCGGCCTGCTTCATCGGCGGGGCTTCGGCTTA
CGGCGGTATCGGCACGATCGGCGGGGCCATCATCGGCGGTCTTGTCATGGGAGTCATGAACAACGGTATGTCGCTGCTCG
GCCTGGGCATCGACTGGCAGCAGGCGATAAAAGGCCTCGTCCTTCTGATTGCCGTTGCATTTGATATTTACAATAAGAAT
AAAACTTCTTAA

Upstream 100 bases:

>100_bases
TGTGAGGGGGAAATCACCGCCGAATTTTCCAAAGAAGAAGCCGATCAGGAGAAGCTGATGAAATATATGACCATCCGCAT
GAAGAGAGGGGGAGAAGCGT

Downstream 100 bases:

>100_bases
TTCATAAGAAAAACCTGTTTTTGAACTTCAAAAACAGGTTTTTTCATTATTGCTGGACGGAACGCCCTTCCTGATTCAGT
GTTGGATTTATTTTTTTAGG

Product: hypothetical protein

Products: ADP; phosphate; xylose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 403; Mature: 403

Protein sequence:

>403_residues
MQTPVQTDKDRAQPGYFQLFRDMYKQNIRKYSMVIALVFIMLLFQILTDGILLRPLNITNLILQNSYILILAIGMMLVII
TGHIDLSVGSVAAFVGAVSAMMIIENDMPLFAAVVLSLLLGAAIGAWQGFWIAYVKIPAFIVTLAGMLLFRGLTMIVLEG
KSIAPFPVSFQKMASGFIPDWLNGGTFHLTTIVAGAGVSILYLVYQLQQRNMQKKFQFDLQGKGLFTVKVFFIIAIINLF
TYILATYEGIPLILITLFVLIAGYTFVMKKTVIGRRIYAIGGNEKAAELSGIKTKRLTFMVFVNMGVLAALSGLIFAARL
NAATPKAGNLFELDAIAACFIGGASAYGGIGTIGGAIIGGLVMGVMNNGMSLLGLGIDWQQAIKGLVLLIAVAFDIYNKN
KTS

Sequences:

>Translated_403_residues
MQTPVQTDKDRAQPGYFQLFRDMYKQNIRKYSMVIALVFIMLLFQILTDGILLRPLNITNLILQNSYILILAIGMMLVII
TGHIDLSVGSVAAFVGAVSAMMIIENDMPLFAAVVLSLLLGAAIGAWQGFWIAYVKIPAFIVTLAGMLLFRGLTMIVLEG
KSIAPFPVSFQKMASGFIPDWLNGGTFHLTTIVAGAGVSILYLVYQLQQRNMQKKFQFDLQGKGLFTVKVFFIIAIINLF
TYILATYEGIPLILITLFVLIAGYTFVMKKTVIGRRIYAIGGNEKAAELSGIKTKRLTFMVFVNMGVLAALSGLIFAARL
NAATPKAGNLFELDAIAACFIGGASAYGGIGTIGGAIIGGLVMGVMNNGMSLLGLGIDWQQAIKGLVLLIAVAFDIYNKN
KTS
>Mature_403_residues
MQTPVQTDKDRAQPGYFQLFRDMYKQNIRKYSMVIALVFIMLLFQILTDGILLRPLNITNLILQNSYILILAIGMMLVII
TGHIDLSVGSVAAFVGAVSAMMIIENDMPLFAAVVLSLLLGAAIGAWQGFWIAYVKIPAFIVTLAGMLLFRGLTMIVLEG
KSIAPFPVSFQKMASGFIPDWLNGGTFHLTTIVAGAGVSILYLVYQLQQRNMQKKFQFDLQGKGLFTVKVFFIIAIINLF
TYILATYEGIPLILITLFVLIAGYTFVMKKTVIGRRIYAIGGNEKAAELSGIKTKRLTFMVFVNMGVLAALSGLIFAARL
NAATPKAGNLFELDAIAACFIGGASAYGGIGTIGGAIIGGLVMGVMNNGMSLLGLGIDWQQAIKGLVLLIAVAFDIYNKN
KTS

Specific function: Part of the binding-protein-dependent transport system for D-xylose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4214

COG function: function code G; ABC-type xylose transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789992, Length=383, Percent_Identity=37.0757180156658, Blast_Score=240, Evalue=1e-64,
Organism=Escherichia coli, GI1790191, Length=136, Percent_Identity=46.3235294117647, Blast_Score=118, Evalue=7e-28,
Organism=Escherichia coli, GI1788896, Length=185, Percent_Identity=34.5945945945946, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI145693152, Length=157, Percent_Identity=38.8535031847134, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1790524, Length=158, Percent_Identity=39.2405063291139, Blast_Score=101, Evalue=8e-23,
Organism=Escherichia coli, GI87082395, Length=102, Percent_Identity=46.078431372549, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI145693214, Length=342, Percent_Identity=30.7017543859649, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1788471, Length=143, Percent_Identity=41.2587412587413, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787793, Length=137, Percent_Identity=35.7664233576642, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787794, Length=144, Percent_Identity=27.7777777777778, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 43672; Mature: 43672

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTPVQTDKDRAQPGYFQLFRDMYKQNIRKYSMVIALVFIMLLFQILTDGILLRPLNITN
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHH
LILQNSYILILAIGMMLVIITGHIDLSVGSVAAFVGAVSAMMIIENDMPLFAAVVLSLLL
HHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHH
GAAIGAWQGFWIAYVKIPAFIVTLAGMLLFRGLTMIVLEGKSIAPFPVSFQKMASGFIPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHCCCCCC
WLNGGTFHLTTIVAGAGVSILYLVYQLQQRNMQKKFQFDLQGKGLFTVKVFFIIAIINLF
CCCCCCEEEHHHHHHCCHHHHHHHHHHHHHCHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
TYILATYEGIPLILITLFVLIAGYTFVMKKTVIGRRIYAIGGNEKAAELSGIKTKRLTFM
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCCCHHHHHHH
VFVNMGVLAALSGLIFAARLNAATPKAGNLFELDAIAACFIGGASAYGGIGTIGGAIIGG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHH
LVMGVMNNGMSLLGLGIDWQQAIKGLVLLIAVAFDIYNKNKTS
HHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MQTPVQTDKDRAQPGYFQLFRDMYKQNIRKYSMVIALVFIMLLFQILTDGILLRPLNITN
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCHHH
LILQNSYILILAIGMMLVIITGHIDLSVGSVAAFVGAVSAMMIIENDMPLFAAVVLSLLL
HHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHH
GAAIGAWQGFWIAYVKIPAFIVTLAGMLLFRGLTMIVLEGKSIAPFPVSFQKMASGFIPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHCCCCCC
WLNGGTFHLTTIVAGAGVSILYLVYQLQQRNMQKKFQFDLQGKGLFTVKVFFIIAIINLF
CCCCCCEEEHHHHHHCCHHHHHHHHHHHHHCHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
TYILATYEGIPLILITLFVLIAGYTFVMKKTVIGRRIYAIGGNEKAAELSGIKTKRLTFM
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHCCCCHHHHHHH
VFVNMGVLAALSGLIFAARLNAATPKAGNLFELDAIAACFIGGASAYGGIGTIGGAIIGG
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEHHHHHHHHHCCCCCCCCHHHHHHHHHHH
LVMGVMNNGMSLLGLGIDWQQAIKGLVLLIAVAFDIYNKNKTS
HHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; xylose [Periplasm]; H2O [C]

Specific reaction: ATP + xylose [Periplasm] + H2O = ADP + phosphate + xylose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]