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The map label for this gene is ganA [H]

Identifier: 52784267

GI number: 52784267

Start: 445678

End: 447750

Strand: Direct

Name: ganA [H]

Synonym: BLi00447

Alternate gene names: 52784267

Gene position: 445678-447750 (Clockwise)

Preceding gene: 52784264

Following gene: 52784270

Centisome position: 10.55

GC content: 51.23

Gene sequence:

>2073_bases
ATGGTTAAACCGTATCCCCCGATCAGCCGGAAAGTTCCCCGACTATTGCATGGAGCCGATTACAACCCGGATCAATGGCT
TAAATATCCGGACGTATTAAAAGAAGATATCCGCCTGATGAAACTGTCCCGCTGCAATGTGATGTCTGTCGGCATTTTCT
CCTGGGTTTCGCTCGAGCCTGAAGAAGGAAGATTTACATTTGACTGGTTCGATCAGGTTCTTGATACTTTCAAGGAAAAC
GGAATTTATGCGTTTTTGGCTACACCGAGCGGTGCCAGACCGGCTTGGATGTCCAAAAAGTATCCAGAGGTGCTGAGAAC
GGAGCGCAACAGGGTCAGAAACCTTCACGGAAAGCGGCACAATCACTGCTATACGTCGCCTGTCTACCGCCGGAAAACGG
CGATCATAAACGGAAAGCTCGCGGAGCGCTATGCGCATCACCCGGCCGTCATCGGCTGGCACATTTCTAATGAATACGGC
GGAGAATGCCATTGTGAACTTTGCCAAGACAAGTTCAGAGAGTGGCTGCTGGCGAAATTCAAAACGCTGGACCGCCTTAA
TGATGCATGGTGGACATCGTTTTGGAGCCATACCTATACAGATTGGGACGAGATCGAGTCGCCGGCTCCGCACGGCGAGG
ATGCCGTTCACGGTCTGAATTTGGACTGGAAGCGTTTTGTCACGGATCAAACGGTTGATTTTTGCCGGCATGAAATCGCC
CACGTCCGTTCGTTTAACCCTGATCTGCCTGTGACGACGAATTTTATGGGAACGTATGCCGGATTGAATTATTGGAAGTT
TGCCGATTTGCTTGATGTCATCTCGTGGGATTCTTATCCGGCATGGCACAACAGCCGGCAGGAAGACAGCCGGCTTGGAG
CCGATATTGCTTTTGTTCATGACATCAATCGCTCTCTTAAAGGCGGCCGGCCGTTCATGCTGATGGAAAGCACGCCGAGC
ATGACGAACTGGCAGGATGTCAGCAAGCTGAAGCGCCCCGGTATGCATGAATTGTCGTCATTACAGGCAGTCGCTCACGG
ATCGGACACCGTTCAGTATTTTCAATGGCGGAAAAGCCGCGGGTCAAGCGAAAAATTTCACGGAGCAGTCGTTGATCATG
AAGGATCAGAGCATACGCGCGTTTTTCAGGAAGTGAAAAAGCTCGGGGAGAAGCTCGAAAAGCTGGAAGACGTCGCAGGG
ACGACAGTCGAACCCGAGGCCGCGATTATATTTGACTGGGAGAATCGCTGGGCTTTGGAAGATGCCCAAGGTCCGCGCAA
TATCGGAAAGCATTATGAACGGACCGCCAAATCGTTTTATGAACCGTTTTGGCGGGAAGGCGTACCGGTTGATGTGATTC
ATATGGAGGCCGATTTCTCCCGCTATAAGCTTTTGGTCGCCCCGATGCTCTACATGCTGCGAGAAGGCACCGCTGAAAGG
ATTGAACAGTTTGTTCAAAACGGAGGGACATTTGTCGCCACTTATTGGTCGGGCATTGTTGATGAGAATGAACTTACGTT
CCTGGGAGGGTTTCCTGGAGGCTTAAGAAAAACGCTCGGCATTTGGTCTGAGGAGATCGATGCTCTTCATGACGGACAGA
AAAATACCATTGTGATGGATGAAGAAAACAGGCTCGGATTAAGCGGAAGCTATGAAGCCAGCGAGCTTTGCGATCTGATT
CATTTAGAAGGGGCCGAAGCGCTCGCTGCGTACGAGGATGATTTTTACGCGGGCCGGCCGGCGCTGACGGTCAATTTGTT
CGGAGACGGGAAGGCCTACTATATCGCTTCAAGGAATGAGGCGGCGTTCCAAGAGGCGTTTATATCCAGGCTCATTGAAG
AGTGCGGGATTGCCAAAGTGCTCGATACAGAGCTCCCGAAAGGCGTCACCGCCCAGCTCCGCACAGACGGCCGCCACGAT
TATATTTTCGTGATGAATTTTACAGCGGAAAACAGAAGTGTCTCGCTTCCGGAGGAAACAAATACGGACGTTTTAAAGGG
AACCCGGAAAAAAGGCGCGCTCAAACTGCCGCCTTACGGAACGAGCATTTTACGGAGAAGCCATAAGGCATAG

Upstream 100 bases:

>100_bases
ACAGAGTATATAATCTAACAACCTGTTTTTGAAAGCGTTTTTAGTGTCATGTCCGTCTCCGCGTCATATGAAAACGAGGA
AGAAAGGATGAAACTGTAGG

Downstream 100 bases:

>100_bases
GAAGCCTTACTTTTCAGGCCGACGCTTCGTGCAATATGCAGCAGCAAGCAGGAAGATGACAGCAGAAGTGTACGCCAATA
CACCTTGATTAAAAACGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: Beta-gal; Beta-1,4-galactooligomerase; Galactooligomerase [H]

Number of amino acids: Translated: 690; Mature: 690

Protein sequence:

>690_residues
MVKPYPPISRKVPRLLHGADYNPDQWLKYPDVLKEDIRLMKLSRCNVMSVGIFSWVSLEPEEGRFTFDWFDQVLDTFKEN
GIYAFLATPSGARPAWMSKKYPEVLRTERNRVRNLHGKRHNHCYTSPVYRRKTAIINGKLAERYAHHPAVIGWHISNEYG
GECHCELCQDKFREWLLAKFKTLDRLNDAWWTSFWSHTYTDWDEIESPAPHGEDAVHGLNLDWKRFVTDQTVDFCRHEIA
HVRSFNPDLPVTTNFMGTYAGLNYWKFADLLDVISWDSYPAWHNSRQEDSRLGADIAFVHDINRSLKGGRPFMLMESTPS
MTNWQDVSKLKRPGMHELSSLQAVAHGSDTVQYFQWRKSRGSSEKFHGAVVDHEGSEHTRVFQEVKKLGEKLEKLEDVAG
TTVEPEAAIIFDWENRWALEDAQGPRNIGKHYERTAKSFYEPFWREGVPVDVIHMEADFSRYKLLVAPMLYMLREGTAER
IEQFVQNGGTFVATYWSGIVDENELTFLGGFPGGLRKTLGIWSEEIDALHDGQKNTIVMDEENRLGLSGSYEASELCDLI
HLEGAEALAAYEDDFYAGRPALTVNLFGDGKAYYIASRNEAAFQEAFISRLIEECGIAKVLDTELPKGVTAQLRTDGRHD
YIFVMNFTAENRSVSLPEETNTDVLKGTRKKGALKLPPYGTSILRRSHKA

Sequences:

>Translated_690_residues
MVKPYPPISRKVPRLLHGADYNPDQWLKYPDVLKEDIRLMKLSRCNVMSVGIFSWVSLEPEEGRFTFDWFDQVLDTFKEN
GIYAFLATPSGARPAWMSKKYPEVLRTERNRVRNLHGKRHNHCYTSPVYRRKTAIINGKLAERYAHHPAVIGWHISNEYG
GECHCELCQDKFREWLLAKFKTLDRLNDAWWTSFWSHTYTDWDEIESPAPHGEDAVHGLNLDWKRFVTDQTVDFCRHEIA
HVRSFNPDLPVTTNFMGTYAGLNYWKFADLLDVISWDSYPAWHNSRQEDSRLGADIAFVHDINRSLKGGRPFMLMESTPS
MTNWQDVSKLKRPGMHELSSLQAVAHGSDTVQYFQWRKSRGSSEKFHGAVVDHEGSEHTRVFQEVKKLGEKLEKLEDVAG
TTVEPEAAIIFDWENRWALEDAQGPRNIGKHYERTAKSFYEPFWREGVPVDVIHMEADFSRYKLLVAPMLYMLREGTAER
IEQFVQNGGTFVATYWSGIVDENELTFLGGFPGGLRKTLGIWSEEIDALHDGQKNTIVMDEENRLGLSGSYEASELCDLI
HLEGAEALAAYEDDFYAGRPALTVNLFGDGKAYYIASRNEAAFQEAFISRLIEECGIAKVLDTELPKGVTAQLRTDGRHD
YIFVMNFTAENRSVSLPEETNTDVLKGTRKKGALKLPPYGTSILRRSHKA
>Mature_690_residues
MVKPYPPISRKVPRLLHGADYNPDQWLKYPDVLKEDIRLMKLSRCNVMSVGIFSWVSLEPEEGRFTFDWFDQVLDTFKEN
GIYAFLATPSGARPAWMSKKYPEVLRTERNRVRNLHGKRHNHCYTSPVYRRKTAIINGKLAERYAHHPAVIGWHISNEYG
GECHCELCQDKFREWLLAKFKTLDRLNDAWWTSFWSHTYTDWDEIESPAPHGEDAVHGLNLDWKRFVTDQTVDFCRHEIA
HVRSFNPDLPVTTNFMGTYAGLNYWKFADLLDVISWDSYPAWHNSRQEDSRLGADIAFVHDINRSLKGGRPFMLMESTPS
MTNWQDVSKLKRPGMHELSSLQAVAHGSDTVQYFQWRKSRGSSEKFHGAVVDHEGSEHTRVFQEVKKLGEKLEKLEDVAG
TTVEPEAAIIFDWENRWALEDAQGPRNIGKHYERTAKSFYEPFWREGVPVDVIHMEADFSRYKLLVAPMLYMLREGTAER
IEQFVQNGGTFVATYWSGIVDENELTFLGGFPGGLRKTLGIWSEEIDALHDGQKNTIVMDEENRLGLSGSYEASELCDLI
HLEGAEALAAYEDDFYAGRPALTVNLFGDGKAYYIASRNEAAFQEAFISRLIEECGIAKVLDTELPKGVTAQLRTDGRHD
YIFVMNFTAENRSVSLPEETNTDVLKGTRKKGALKLPPYGTSILRRSHKA

Specific function: Hydrolyzes oligosaccharides released by the endo-1,4- beta-galactosidase galA from arabinogalactan type I, a pectic plant polysaccharide. It is unable to use lactose as a sole carbon source [H]

COG id: COG1874

COG function: function code G; Beta-galactosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 42 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013739
- InterPro:   IPR013738
- InterPro:   IPR013780
- InterPro:   IPR003476
- InterPro:   IPR013529
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF02449 Glyco_hydro_42; PF08533 Glyco_hydro_42C; PF08532 Glyco_hydro_42M [H]

EC number: =3.2.1.23 [H]

Molecular weight: Translated: 79159; Mature: 79159

Theoretical pI: Translated: 6.33; Mature: 6.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKPYPPISRKVPRLLHGADYNPDQWLKYPDVLKEDIRLMKLSRCNVMSVGIFSWVSLEP
CCCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCEEEECHHHEEECCC
EEGRFTFDWFDQVLDTFKENGIYAFLATPSGARPAWMSKKYPEVLRTERNRVRNLHGKRH
CCCCEEHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
NHCYTSPVYRRKTAIINGKLAERYAHHPAVIGWHISNEYGGECHCELCQDKFREWLLAKF
CCCCCCCHHHHHHHEECCHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
KTLDRLNDAWWTSFWSHTYTDWDEIESPAPHGEDAVHGLNLDWKRFVTDQTVDFCRHEIA
HHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
HVRSFNPDLPVTTNFMGTYAGLNYWKFADLLDVISWDSYPAWHNSRQEDSRLGADIAFVH
HHHCCCCCCCEECCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCEEEHH
DINRSLKGGRPFMLMESTPSMTNWQDVSKLKRPGMHELSSLQAVAHGSDTVQYFQWRKSR
HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCC
GSSEKFHGAVVDHEGSEHTRVFQEVKKLGEKLEKLEDVAGTTVEPEAAIIFDWENRWALE
CCCCHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEECC
DAQGPRNIGKHYERTAKSFYEPFWREGVPVDVIHMEADFSRYKLLVAPMLYMLREGTAER
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCHHH
IEQFVQNGGTFVATYWSGIVDENELTFLGGFPGGLRKTLGIWSEEIDALHDGQKNTIVMD
HHHHHHCCCCEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE
EENRLGLSGSYEASELCDLIHLEGAEALAAYEDDFYAGRPALTVNLFGDGKAYYIASRNE
CCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCEEEEEEECCCEEEEEECCCH
AAFQEAFISRLIEECGIAKVLDTELPKGVTAQLRTDGRHDYIFVMNFTAENRSVSLPEET
HHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEECCCCCCEEEEEEEECCCCEEECCCCC
NTDVLKGTRKKGALKLPPYGTSILRRSHKA
CCHHHHCCCCCCCEECCCCCHHHHHHCCCC
>Mature Secondary Structure
MVKPYPPISRKVPRLLHGADYNPDQWLKYPDVLKEDIRLMKLSRCNVMSVGIFSWVSLEP
CCCCCCCHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCEEEECHHHEEECCC
EEGRFTFDWFDQVLDTFKENGIYAFLATPSGARPAWMSKKYPEVLRTERNRVRNLHGKRH
CCCCEEHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
NHCYTSPVYRRKTAIINGKLAERYAHHPAVIGWHISNEYGGECHCELCQDKFREWLLAKF
CCCCCCCHHHHHHHEECCHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
KTLDRLNDAWWTSFWSHTYTDWDEIESPAPHGEDAVHGLNLDWKRFVTDQTVDFCRHEIA
HHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
HVRSFNPDLPVTTNFMGTYAGLNYWKFADLLDVISWDSYPAWHNSRQEDSRLGADIAFVH
HHHCCCCCCCEECCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCEEEHH
DINRSLKGGRPFMLMESTPSMTNWQDVSKLKRPGMHELSSLQAVAHGSDTVQYFQWRKSR
HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHCC
GSSEKFHGAVVDHEGSEHTRVFQEVKKLGEKLEKLEDVAGTTVEPEAAIIFDWENRWALE
CCCCHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCEECC
DAQGPRNIGKHYERTAKSFYEPFWREGVPVDVIHMEADFSRYKLLVAPMLYMLREGTAER
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCHHH
IEQFVQNGGTFVATYWSGIVDENELTFLGGFPGGLRKTLGIWSEEIDALHDGQKNTIVMD
HHHHHHCCCCEEEEECCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEE
EENRLGLSGSYEASELCDLIHLEGAEALAAYEDDFYAGRPALTVNLFGDGKAYYIASRNE
CCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHCCCCCCCCCEEEEEEECCCEEEEEECCCH
AAFQEAFISRLIEECGIAKVLDTELPKGVTAQLRTDGRHDYIFVMNFTAENRSVSLPEET
HHHHHHHHHHHHHHCCCHHHHHHCCCCCCEEEEECCCCCCEEEEEEEECCCCEEECCCCC
NTDVLKGTRKKGALKLPPYGTSILRRSHKA
CCHHHHCCCCCCCEECCCCCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA