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The map label for this gene is srfAD [H]

Identifier: 52784226

GI number: 52784226

Start: 404121

End: 404861

Strand: Direct

Name: srfAD [H]

Synonym: BLi00404

Alternate gene names: 52784226

Gene position: 404121-404861 (Clockwise)

Preceding gene: 52784225

Following gene: 52784228

Centisome position: 9.57

GC content: 50.47

Gene sequence:

>741_bases
ATGAACGAGATCATTAAGCAGTTTGGAGCGCCGGCAAGCGGTATGCAGTTGATCTGTTTCCCGTTTGCCGGGGGATATTC
GGCATCATTCAGACCGCTTCACGAACATTTAAAAACAGATTTTGATATGCTGGCGATCGAACCGCCTGGACACGGCACAA
ATCGAATGGCGCTTGTCGACAATTTGGAAAAGCTCGCCGATTTGTATATAGCGGCGCTTAAGCCGCGGCTTTCCTCTCAA
TTCGTGCTGTTCGGCCACAGTATGGGCGGCATGGTTGTTTACAGGCTGGCGCAAAAGCTTGAACAAGAAGGGATCTTTCC
GGCAGCCGCTGTGATATCAGCGATACAGCCGCCCCATATTCAGCGGCAAAAGGTGTCTCACCAAAAGGATGACGCATTTC
TCGACCATCTCATTCAGCTTGGCGGAATACCCAAAGAACTGGCAGAGCACAGGGAAATGATGAACTTTTTCCTGCCTTCG
TTCAGAGCGGACTACAGAGCGCTTGAGACGTTCTGCCATACCGATCATACGCCGCTTAGATCGCCTGTGCATATTCTGAA
CGGAGACCGCGATGAGAAATGCATGAGGGATGCGCTTGGCTGGAAAAAGTGGGCGAATACGATCGATTTCCACTATTTCA
AAGGCGGACATATGTATCTTTTATCAGAAACGGAACAAGTAGCCGCCAAGTTGAAAACGATTGCCGCGGCCAGCCGCAGT
ACGGCTGTTCCGACAATGTAA

Upstream 100 bases:

>100_bases
ACATGATGAAATGCTTGCGGACGGCTTTGTTAAAAGCAACGCAGATCTCATCAGACAGATTTTGGGCGAACGTGCCGCTG
TAATCGGAGGTGCATGATGC

Downstream 100 bases:

>100_bases
AGAAAGCGGAAAATCGGTGTGCTGCAGCTGCCGATTTTCCGTTTTTTCAGCTTTTTTTCAGCCGATTTTCCCGCCGAACC
ATCGTCGCCCCAATAATTCC

Product: lichenysin synthetase D

Products: NA

Alternate protein names: Cold shock protein CSI16 [H]

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MNEIIKQFGAPASGMQLICFPFAGGYSASFRPLHEHLKTDFDMLAIEPPGHGTNRMALVDNLEKLADLYIAALKPRLSSQ
FVLFGHSMGGMVVYRLAQKLEQEGIFPAAAVISAIQPPHIQRQKVSHQKDDAFLDHLIQLGGIPKELAEHREMMNFFLPS
FRADYRALETFCHTDHTPLRSPVHILNGDRDEKCMRDALGWKKWANTIDFHYFKGGHMYLLSETEQVAAKLKTIAAASRS
TAVPTM

Sequences:

>Translated_246_residues
MNEIIKQFGAPASGMQLICFPFAGGYSASFRPLHEHLKTDFDMLAIEPPGHGTNRMALVDNLEKLADLYIAALKPRLSSQ
FVLFGHSMGGMVVYRLAQKLEQEGIFPAAAVISAIQPPHIQRQKVSHQKDDAFLDHLIQLGGIPKELAEHREMMNFFLPS
FRADYRALETFCHTDHTPLRSPVHILNGDRDEKCMRDALGWKKWANTIDFHYFKGGHMYLLSETEQVAAKLKTIAAASRS
TAVPTM
>Mature_246_residues
MNEIIKQFGAPASGMQLICFPFAGGYSASFRPLHEHLKTDFDMLAIEPPGHGTNRMALVDNLEKLADLYIAALKPRLSSQ
FVLFGHSMGGMVVYRLAQKLEQEGIFPAAAVISAIQPPHIQRQKVSHQKDDAFLDHLIQLGGIPKELAEHREMMNFFLPS
FRADYRALETFCHTDHTPLRSPVHILNGDRDEKCMRDALGWKKWANTIDFHYFKGGHMYLLSETEQVAAKLKTIAAASRS
TAVPTM

Specific function: Probable thioesterase involved in the biosynthesis of surfactin [H]

COG id: COG3208

COG function: function code Q; Predicted thioesterase involved in non-ribosomal peptide biosynthesis

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the thioesterase family [H]

Homologues:

Organism=Homo sapiens, GI89257335, Length=253, Percent_Identity=26.8774703557312, Blast_Score=77, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012223
- InterPro:   IPR001031 [H]

Pfam domain/function: PF00975 Thioesterase [H]

EC number: NA

Molecular weight: Translated: 27619; Mature: 27619

Theoretical pI: Translated: 7.78; Mature: 7.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEIIKQFGAPASGMQLICFPFAGGYSASFRPLHEHLKTDFDMLAIEPPGHGTNRMALVD
CCHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCHHHHH
NLEKLADLYIAALKPRLSSQFVLFGHSMGGMVVYRLAQKLEQEGIFPAAAVISAIQPPHI
HHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCH
QRQKVSHQKDDAFLDHLIQLGGIPKELAEHREMMNFFLPSFRADYRALETFCHTDHTPLR
HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SPVHILNGDRDEKCMRDALGWKKWANTIDFHYFKGGHMYLLSETEQVAAKLKTIAAASRS
CCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCHHHHHHHHHHHHHHCCC
TAVPTM
CCCCCC
>Mature Secondary Structure
MNEIIKQFGAPASGMQLICFPFAGGYSASFRPLHEHLKTDFDMLAIEPPGHGTNRMALVD
CCHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHCCCCCEEEECCCCCCCCCHHHHH
NLEKLADLYIAALKPRLSSQFVLFGHSMGGMVVYRLAQKLEQEGIFPAAAVISAIQPPHI
HHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCH
QRQKVSHQKDDAFLDHLIQLGGIPKELAEHREMMNFFLPSFRADYRALETFCHTDHTPLR
HHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SPVHILNGDRDEKCMRDALGWKKWANTIDFHYFKGGHMYLLSETEQVAAKLKTIAAASRS
CCHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCHHHHHHHHHHHHHHCCC
TAVPTM
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8355609; 8969502; 9384377 [H]