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The map label for this gene is potC [H]

Identifier: 52784222

GI number: 52784222

Start: 377133

End: 377945

Strand: Direct

Name: potC [H]

Synonym: BLi00400

Alternate gene names: 52784222

Gene position: 377133-377945 (Clockwise)

Preceding gene: 52784221

Following gene: 52784223

Centisome position: 8.93

GC content: 50.18

Gene sequence:

>813_bases
ATGGGTAGGCGATTGCGACGTATGCGCAGGGGAAAATGGATTGATGCGTGTGTTTGGACAGCGGGTTTATTGGTATACTT
CTTTTTGGCGCTGCCCGTCTTCGTGATCATACTGTCGGCATTCAGCCCGGACGAATATCCGAAGTTCCCGCCATCAGGCA
TCTCGCTGCGCTGGTTTGCCGGAGTTTTCAGCAGCAGCGGCTGGATGGAATCGATTTGGGTCAGCTTTATGCTGCTTCTC
GTTGTAACGCATCTTGCGGTGATCCTTGGAACAGTTGCAGCCTATGCATTGGCGCGGCTGAACTTTCCGGGAAAACAGGC
GATTCAGGCTTTTGTTTTATCGCCGTTGATGATTCCCCAAATCGCATTAGGCGTATCATTTCTCTATTTATTGACAATGA
TTGGGGTAAACGGCACGTTTGCCGGGCTGGCCGCCGGGCATATGCTGATCAGCCTTCCGTATGTCGTTCGGACGGTCGGA
GTCAGCATGGCAAACGTGGATCAGAAGCTTGAACTGGCATCCATGAATCTCGGCGCAGGTCCCTGGCATACCTTTTTTCA
TGTCATCTTGCCGCTTATTAAACCGGGAATCATTGCGGGAGCCGTTTTTGCCTCTGTAACGTCATTCGGAGAAATATCAA
TCAGTCTGTTTGTTTCTTCACCGGCTGTCACGCCTGTACCGGTTCGTACATTCAGCTATATTGACCAGACATTTGATCCG
AGCGTTCATGCGATTTCGGTTATTTTTATCACGGTTTCAGTGATTGCGCTGATCATCATCGAACGGACGATCGGGCTCTC
AAAAACCATGTAG

Upstream 100 bases:

>100_bases
CTTCCTCTTGCAGCCGCAATGTCGATTACTTTATTAGCCGTTGTCAGCGTGGTTATTGGAATCCTTGGCATTTTCCAAAA
GCGTTGGGAGGCGAGAATAA

Downstream 100 bases:

>100_bases
CAGGCGAAACTCAGCCTGCTTTTTTGTATGGAGCATCGGAAGTATTTCAAGATACCGTTCAGAATGAGACAGTTCAGCAA
ATTTAACATTCTGCTTCAAT

Product: hypothetical protein

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 270; Mature: 269

Protein sequence:

>270_residues
MGRRLRRMRRGKWIDACVWTAGLLVYFFLALPVFVIILSAFSPDEYPKFPPSGISLRWFAGVFSSSGWMESIWVSFMLLL
VVTHLAVILGTVAAYALARLNFPGKQAIQAFVLSPLMIPQIALGVSFLYLLTMIGVNGTFAGLAAGHMLISLPYVVRTVG
VSMANVDQKLELASMNLGAGPWHTFFHVILPLIKPGIIAGAVFASVTSFGEISISLFVSSPAVTPVPVRTFSYIDQTFDP
SVHAISVIFITVSVIALIIIERTIGLSKTM

Sequences:

>Translated_270_residues
MGRRLRRMRRGKWIDACVWTAGLLVYFFLALPVFVIILSAFSPDEYPKFPPSGISLRWFAGVFSSSGWMESIWVSFMLLL
VVTHLAVILGTVAAYALARLNFPGKQAIQAFVLSPLMIPQIALGVSFLYLLTMIGVNGTFAGLAAGHMLISLPYVVRTVG
VSMANVDQKLELASMNLGAGPWHTFFHVILPLIKPGIIAGAVFASVTSFGEISISLFVSSPAVTPVPVRTFSYIDQTFDP
SVHAISVIFITVSVIALIIIERTIGLSKTM
>Mature_269_residues
GRRLRRMRRGKWIDACVWTAGLLVYFFLALPVFVIILSAFSPDEYPKFPPSGISLRWFAGVFSSSGWMESIWVSFMLLLV
VTHLAVILGTVAAYALARLNFPGKQAIQAFVLSPLMIPQIALGVSFLYLLTMIGVNGTFAGLAAGHMLISLPYVVRTVGV
SMANVDQKLELASMNLGAGPWHTFFHVILPLIKPGIIAGAVFASVTSFGEISISLFVSSPAVTPVPVRTFSYIDQTFDPS
VHAISVIFITVSVIALIIIERTIGLSKTM

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=218, Percent_Identity=26.1467889908257, Blast_Score=95, Evalue=4e-21,
Organism=Escherichia coli, GI1787714, Length=233, Percent_Identity=29.6137339055794, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1787081, Length=235, Percent_Identity=27.6595744680851, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786980, Length=213, Percent_Identity=34.2723004694836, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788764, Length=144, Percent_Identity=28.4722222222222, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082099, Length=222, Percent_Identity=24.7747747747748, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 29353; Mature: 29222

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
GRRLRRMRRGKWIDACVWTAGLLVYFFLALPVFVIILSAFSPDEYPKFPPSGISLRWFA
CHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
GVFSSSGWMESIWVSFMLLLVVTHLAVILGTVAAYALARLNFPGKQAIQAFVLSPLMIPQ
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
IALGVSFLYLLTMIGVNGTFAGLAAGHMLISLPYVVRTVGVSMANVDQKLELASMNLGAG
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PWHTFFHVILPLIKPGIIAGAVFASVTSFGEISISLFVSSPAVTPVPVRTFSYIDQTFDP
HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCC
SVHAISVIFITVSVIALIIIERTIGLSKTM
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]