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The map label for this gene is ycbG [H]

Identifier: 52784111

GI number: 52784111

Start: 263602

End: 264315

Strand: Direct

Name: ycbG [H]

Synonym: BLi00288

Alternate gene names: 52784111

Gene position: 263602-264315 (Clockwise)

Preceding gene: 52784110

Following gene: 52784112

Centisome position: 6.24

GC content: 44.54

Gene sequence:

>714_bases
GTGGAAGAAGATATGGAAACATTGCAGGTCGAATCAGTCAATCGCAAGACTTTGGCAAAACAGGTTGTTGAACGAATCGT
CCATTTATTATCAAGCGGCCAGTTGAAACCGGGGGACAAACTGCCGACGGAGATTGAGCTCATGGAAAAGCTGAATGTCA
GCAGACCCGTTCTCCGCGAAGCTTTAATATCGCTCGAAACGCTCGGAATTATCAAAAGAAAAACCCGGGACGGCACATAT
TTTAATGATAAAATCGGCATTCAGCCGTTTTCTGTCATGCTGGCTTTGGCAGTCGATAATTTGCCGGCCATTATTGAAGC
GAGGATGGCGCTGGAGCTCGGGCTTGTCACGATCGCCGCAGAAAAGATCAATGACAGTCAGCTCGAAAGGCTTCAGGAAA
CGATCGATATTATAGCAAACAGCACGGATAATCATTATGGAGAAGCGGATAAGGAATTTCACCGGATTATCGCTTTGAGC
GCGAACAACCCGGTGCTTGAAGGGATGATTCAATCGCTCTTGATCACACACGCCAAAATCGACAGCCAGATTCCATATAG
GGAAAGGGACCGGACTGTCGAATATCATACGAATATTTTGAAAGCCCTTCAACAAAGGGACCCATATCAAGCCTATCACC
ATATGTATGAGCATTTAAAATTTGTACGTGACAAAATACTGAATGGTCTTCGTGATGAAAAAAACAATCATTAA

Upstream 100 bases:

>100_bases
CGATAATTGCGGAAACAGCGGTTTGAGAGGCCCCTAGCCGACATTGTCATACGCGATATTTTGTCTTACAATATGAACAA
CTGAAAGGGGGCCCACAGTC

Downstream 100 bases:

>100_bases
GTTGTTTGACAGCGCTTTCTAACATGTGCCGCGGCGGGAGAAGGGCCGCGGAAAGGCGCTGATCGAAAAGGGGAGTTGAT
CAATCCTTATGCTTGTCAAT

Product: YcbG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 237

Protein sequence:

>237_residues
MEEDMETLQVESVNRKTLAKQVVERIVHLLSSGQLKPGDKLPTEIELMEKLNVSRPVLREALISLETLGIIKRKTRDGTY
FNDKIGIQPFSVMLALAVDNLPAIIEARMALELGLVTIAAEKINDSQLERLQETIDIIANSTDNHYGEADKEFHRIIALS
ANNPVLEGMIQSLLITHAKIDSQIPYRERDRTVEYHTNILKALQQRDPYQAYHHMYEHLKFVRDKILNGLRDEKNNH

Sequences:

>Translated_237_residues
MEEDMETLQVESVNRKTLAKQVVERIVHLLSSGQLKPGDKLPTEIELMEKLNVSRPVLREALISLETLGIIKRKTRDGTY
FNDKIGIQPFSVMLALAVDNLPAIIEARMALELGLVTIAAEKINDSQLERLQETIDIIANSTDNHYGEADKEFHRIIALS
ANNPVLEGMIQSLLITHAKIDSQIPYRERDRTVEYHTNILKALQQRDPYQAYHHMYEHLKFVRDKILNGLRDEKNNH
>Mature_237_residues
MEEDMETLQVESVNRKTLAKQVVERIVHLLSSGQLKPGDKLPTEIELMEKLNVSRPVLREALISLETLGIIKRKTRDGTY
FNDKIGIQPFSVMLALAVDNLPAIIEARMALELGLVTIAAEKINDSQLERLQETIDIIANSTDNHYGEADKEFHRIIALS
ANNPVLEGMIQSLLITHAKIDSQIPYRERDRTVEYHTNILKALQQRDPYQAYHHMYEHLKFVRDKILNGLRDEKNNH

Specific function: Sialic acid (NANA) and N-acetylmannosamine utilization [C]

COG id: COG2186

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789621, Length=227, Percent_Identity=26.431718061674, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1786303, Length=230, Percent_Identity=26.9565217391304, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87082208, Length=226, Percent_Identity=26.5486725663717, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1790032, Length=223, Percent_Identity=27.3542600896861, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1790780, Length=207, Percent_Identity=28.0193236714976, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI48994955, Length=162, Percent_Identity=29.0123456790123, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 27171; Mature: 27171

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEDMETLQVESVNRKTLAKQVVERIVHLLSSGQLKPGDKLPTEIELMEKLNVSRPVLRE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHH
ALISLETLGIIKRKTRDGTYFNDKIGIQPFSVMLALAVDNLPAIIEARMALELGLVTIAA
HHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
EKINDSQLERLQETIDIIANSTDNHYGEADKEFHRIIALSANNPVLEGMIQSLLITHAKI
HHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHH
DSQIPYRERDRTVEYHTNILKALQQRDPYQAYHHMYEHLKFVRDKILNGLRDEKNNH
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MEEDMETLQVESVNRKTLAKQVVERIVHLLSSGQLKPGDKLPTEIELMEKLNVSRPVLRE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHH
ALISLETLGIIKRKTRDGTYFNDKIGIQPFSVMLALAVDNLPAIIEARMALELGLVTIAA
HHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
EKINDSQLERLQETIDIIANSTDNHYGEADKEFHRIIALSANNPVLEGMIQSLLITHAKI
HHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHH
DSQIPYRERDRTVEYHTNILKALQQRDPYQAYHHMYEHLKFVRDKILNGLRDEKNNH
CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7704254; 9384377 [H]