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The map label for this gene is ybdH [H]

Identifier: 52784082

GI number: 52784082

Start: 230062

End: 231117

Strand: Direct

Name: ybdH [H]

Synonym: BLi00258

Alternate gene names: 52784082

Gene position: 230062-231117 (Clockwise)

Preceding gene: 52784080

Following gene: 52784083

Centisome position: 5.45

GC content: 50.09

Gene sequence:

>1056_bases
ATGCAGCCTGAAGATATTGTCAGAAGCGGTCCAAACCAATACGTTTGCAGAGAGGGGATCGTGAAAGAACTGCCGTCATT
TGCGAATGCATTCGAACGTCCTGTCATCATTTCAGGGGTTAAATCGTTTAAAGCTTTTACACGTTATACGACACCTCCAG
CCGATTGGAAAGTCGTTCAGCATACGGGCTGCAGTTCCCTAAATAAGATTAAAAAAGCAGCAGAGGAAGCAGAATCAGCA
GACGTCATCATAGGAATAGGCGGGGGAACCGTCTTAGATACAGCGAAGGCAGCCGCCGATTTGCTGAACATTGAAGTCAT
GACGATTCCGACGATCCCGGGAACATGTGCGGCAAGCACGCCGTTAAGCGTCATCTATGACGATGAAGGTAACTTTTCGG
GCGTCCAATATCAGAAGCGCTCCAGCTATTTGACACTGGTCGATCCGCTGCTGCTTCTCTCTTCACCGGTCGCTTATGTG
AAAAGCGGAATCGGCGATACGCTTGCGAAATGGTATGAGGCAGAAGCGATCATCAGAAATACGGCCGATTCGCTTTCTAT
CATGGTTCAGACAGGGCTGAGGCAGTCTGTCTATATTCGGGATATTTTGTTGACAGAAAGCCTGAAAGCCATAGAGAGCC
TTGAAAAAGGCGAATCCTCCCCAGCTTTCACAAATGTCCTCGAAGCGGTCATTGCGCTGGCAGGCACAGTAGGCGGATAT
GCGGGCCGCTACGGCAGAATGGCCGGGGCCCATGCCATTCACAACGGCTTGACGTTCATCCCCGAAACCCATCGTGTGCT
GCACGGCCAAAAGGTAGCCTACGGGATACTGGTGCAGCTTGCTTTAGAAGGGCGGACAGATGAAATAGCCGAACTGATTC
CCTTTTATGAAGGGCTCGGTTTTCCGAGAAGACTTAGCGATTTGGGCATTTTAGAAAATATTGAAGCGGCCAAACGGATC
ATCGCCGCCCATGCCGCGCGTCCGGATGAATCTTTATGTTTGATGGGATCTTTTCATGAAGCGGATGTGATTGCGGCGAT
AGAGTCGCTTGAATAA

Upstream 100 bases:

>100_bases
CCAAGCACTGCCCCTTGCTGAGCGGTTTGTGATATCGTTTGACATCTTGTTAGAAAGTGAGATGATAAATATTAGAAAAG
AATAGAAGGAGTGGGGAAAT

Downstream 100 bases:

>100_bases
ACCCGGTTTTATACGCCTTTGAACTATTCAAAGGCGTATTTTATTTTTAGCGACTTCTTGAGAAAAAAACCACTCTTGTA
AACAAGGTCTTTATCACTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MQPEDIVRSGPNQYVCREGIVKELPSFANAFERPVIISGVKSFKAFTRYTTPPADWKVVQHTGCSSLNKIKKAAEEAESA
DVIIGIGGGTVLDTAKAAADLLNIEVMTIPTIPGTCAASTPLSVIYDDEGNFSGVQYQKRSSYLTLVDPLLLLSSPVAYV
KSGIGDTLAKWYEAEAIIRNTADSLSIMVQTGLRQSVYIRDILLTESLKAIESLEKGESSPAFTNVLEAVIALAGTVGGY
AGRYGRMAGAHAIHNGLTFIPETHRVLHGQKVAYGILVQLALEGRTDEIAELIPFYEGLGFPRRLSDLGILENIEAAKRI
IAAHAARPDESLCLMGSFHEADVIAAIESLE

Sequences:

>Translated_351_residues
MQPEDIVRSGPNQYVCREGIVKELPSFANAFERPVIISGVKSFKAFTRYTTPPADWKVVQHTGCSSLNKIKKAAEEAESA
DVIIGIGGGTVLDTAKAAADLLNIEVMTIPTIPGTCAASTPLSVIYDDEGNFSGVQYQKRSSYLTLVDPLLLLSSPVAYV
KSGIGDTLAKWYEAEAIIRNTADSLSIMVQTGLRQSVYIRDILLTESLKAIESLEKGESSPAFTNVLEAVIALAGTVGGY
AGRYGRMAGAHAIHNGLTFIPETHRVLHGQKVAYGILVQLALEGRTDEIAELIPFYEGLGFPRRLSDLGILENIEAAKRI
IAAHAARPDESLCLMGSFHEADVIAAIESLE
>Mature_351_residues
MQPEDIVRSGPNQYVCREGIVKELPSFANAFERPVIISGVKSFKAFTRYTTPPADWKVVQHTGCSSLNKIKKAAEEAESA
DVIIGIGGGTVLDTAKAAADLLNIEVMTIPTIPGTCAASTPLSVIYDDEGNFSGVQYQKRSSYLTLVDPLLLLSSPVAYV
KSGIGDTLAKWYEAEAIIRNTADSLSIMVQTGLRQSVYIRDILLTESLKAIESLEKGESSPAFTNVLEAVIALAGTVGGY
AGRYGRMAGAHAIHNGLTFIPETHRVLHGQKVAYGILVQLALEGRTDEIAELIPFYEGLGFPRRLSDLGILENIEAAKRI
IAAHAARPDESLCLMGSFHEADVIAAIESLE

Specific function: Unknown

COG id: COG0371

COG function: function code C; Glycerol dehydrogenase and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron-containing alcohol dehydrogenase family [H]

Homologues:

Organism=Escherichia coli, GI1786815, Length=338, Percent_Identity=38.1656804733728, Blast_Score=214, Evalue=5e-57,
Organism=Escherichia coli, GI87082352, Length=339, Percent_Identity=33.0383480825959, Blast_Score=159, Evalue=2e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001670
- InterPro:   IPR018211
- InterPro:   IPR016205 [H]

Pfam domain/function: PF00465 Fe-ADH [H]

EC number: 1.1.-.- [C]

Molecular weight: Translated: 37736; Mature: 37736

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPEDIVRSGPNQYVCREGIVKELPSFANAFERPVIISGVKSFKAFTRYTTPPADWKVVQ
CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCCEEEE
HTGCSSLNKIKKAAEEAESADVIIGIGGGTVLDTAKAAADLLNIEVMTIPTIPGTCAAST
CCCCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHEEEEEEECCCCCCCCCCC
PLSVIYDDEGNFSGVQYQKRSSYLTLVDPLLLLSSPVAYVKSGIGDTLAKWYEAEAIIRN
CCEEEECCCCCCCCCEEHHHCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHC
TADSLSIMVQTGLRQSVYIRDILLTESLKAIESLEKGESSPAFTNVLEAVIALAGTVGGY
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHH
AGRYGRMAGAHAIHNGLTFIPETHRVLHGQKVAYGILVQLALEGRTDEIAELIPFYEGLG
HHHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
FPRRLSDLGILENIEAAKRIIAAHAARPDESLCLMGSFHEADVIAAIESLE
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCC
>Mature Secondary Structure
MQPEDIVRSGPNQYVCREGIVKELPSFANAFERPVIISGVKSFKAFTRYTTPPADWKVVQ
CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCCCCEEEE
HTGCSSLNKIKKAAEEAESADVIIGIGGGTVLDTAKAAADLLNIEVMTIPTIPGTCAAST
CCCCHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHEEEEEEECCCCCCCCCCC
PLSVIYDDEGNFSGVQYQKRSSYLTLVDPLLLLSSPVAYVKSGIGDTLAKWYEAEAIIRN
CCEEEECCCCCCCCCEEHHHCCCHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHC
TADSLSIMVQTGLRQSVYIRDILLTESLKAIESLEKGESSPAFTNVLEAVIALAGTVGGY
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHH
AGRYGRMAGAHAIHNGLTFIPETHRVLHGQKVAYGILVQLALEGRTDEIAELIPFYEGLG
HHHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
FPRRLSDLGILENIEAAKRIIAAHAARPDESLCLMGSFHEADVIAAIESLE
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1848300; 7567469 [H]