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The map label for this gene is ybcL [H]

Identifier: 52784038

GI number: 52784038

Start: 188355

End: 189527

Strand: Direct

Name: ybcL [H]

Synonym: BLi00210

Alternate gene names: 52784038

Gene position: 188355-189527 (Clockwise)

Preceding gene: 52784037

Following gene: 52784041

Centisome position: 4.46

GC content: 47.4

Gene sequence:

>1173_bases
ATGTTTAGCACTTGGAAAATTTATCTTTTAGCAATCATCAGTTTTTTGGTAGGGACCTCAGAGTACATCATTTCCGGTAT
TTTGGATCAGATCGCCCACACACTCGGGATAACTTTAGCTGCAGCGGGGCAGCTCATTACGATCTTTTCACTGGTGTATG
CTGTTTTCACCCCGGTCCTGATGGCGTTGACGGCAAGTATGGATAGGCGCAAGTTAATGATGTATGCTCTCGGTTTGTTT
GTGATAGGAAATATTTTGGCTTTTACCCTGCCTGGTTATGGTTGGTTTGTTGCAGCGCGTGTCGTTATGGCTTTGGGGGC
AGGCATGGTTGTGGTCACGGCCTTAACGATTGCCGCCAAGATCGCACCGGCGGGTAAGCAGGGCAGTGCAATTGCTACAG
TCGTCATGGGGTTTACCGCTTCTTTGATTATAGGTGTTCCACTCGGAAGAATGACGGCAGAAGCATTAGGGTGGAAGTCT
GTATTTGGGGGAATTGCTTTATTGGGATTCATCGCAATGATTGTTCTATTCTTAACATTGCCGCATACTGAAGGCGATAA
GCCCGTCCCTTTGCTTCAGCAGCTTTCCCTTTTAAAGAAACGGAAAGTAGCGATGGGGTTATCGGTCACTTTTTTCTGGC
TCGGAGGATATTCCGTTGCATATACTTATCTGTCTCCTTACCTTCTGACCGTTTCAGGGATCAGCGGCAATTTGCTCAGC
GGCGTTTTGCTTATATTTGGAATCGCCAGCTTGGTTGGATCGAAGTTTGGCGGATATAGCACTGATAAATGGGGAGTTCC
TTTTACGCTCGTTGGCGGGATGGCGCTGCATATCATCGCACTGATTTTGCTGTCGCTTGTCACCCATTCCTATGTCGGAG
TACTGTTGATTCTCATATTATGGTCGTTCGCCGCATGGTCTACCGGCCCGACGCAGCAATATCACTTAGCGACGCTTGAA
CCCGAATTGTCAGGTGTATTGCTCGGCATCAATCAATCGATGATGCAATTCGCCATGGCCGCAGGTGCAGGAATCGGAGG
GATTTTTGTAGAAAAAGTGTCGCTGGCTTCTATTACGTGGTTTGGGGCATTGGGGGTTATGATTGCGATTGTTGTTGTTT
TGACGACCTTCAGTTCACGGAAAGCAGCACATGTAAGAGAAATCAGTTCATAA

Upstream 100 bases:

>100_bases
ACCATACATATCGACATATTTCGATGTGTTTATTTTTTAATTTTACATATCGTTATTTCGTGATATGTAAATGTATAATG
TGATAAAGGAGCGAACGATA

Downstream 100 bases:

>100_bases
TAGCCTTGATTGGTGTTGAAGATTCAAGGGTTTCATTCGTCATATCTTACCTGCTTTTTTGAGCCTGACAGGCAGCGCTG
AGCCGAAAAATCTAGCATCC

Product: YbcL

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MFSTWKIYLLAIISFLVGTSEYIISGILDQIAHTLGITLAAAGQLITIFSLVYAVFTPVLMALTASMDRRKLMMYALGLF
VIGNILAFTLPGYGWFVAARVVMALGAGMVVVTALTIAAKIAPAGKQGSAIATVVMGFTASLIIGVPLGRMTAEALGWKS
VFGGIALLGFIAMIVLFLTLPHTEGDKPVPLLQQLSLLKKRKVAMGLSVTFFWLGGYSVAYTYLSPYLLTVSGISGNLLS
GVLLIFGIASLVGSKFGGYSTDKWGVPFTLVGGMALHIIALILLSLVTHSYVGVLLILILWSFAAWSTGPTQQYHLATLE
PELSGVLLGINQSMMQFAMAAGAGIGGIFVEKVSLASITWFGALGVMIAIVVVLTTFSSRKAAHVREISS

Sequences:

>Translated_390_residues
MFSTWKIYLLAIISFLVGTSEYIISGILDQIAHTLGITLAAAGQLITIFSLVYAVFTPVLMALTASMDRRKLMMYALGLF
VIGNILAFTLPGYGWFVAARVVMALGAGMVVVTALTIAAKIAPAGKQGSAIATVVMGFTASLIIGVPLGRMTAEALGWKS
VFGGIALLGFIAMIVLFLTLPHTEGDKPVPLLQQLSLLKKRKVAMGLSVTFFWLGGYSVAYTYLSPYLLTVSGISGNLLS
GVLLIFGIASLVGSKFGGYSTDKWGVPFTLVGGMALHIIALILLSLVTHSYVGVLLILILWSFAAWSTGPTQQYHLATLE
PELSGVLLGINQSMMQFAMAAGAGIGGIFVEKVSLASITWFGALGVMIAIVVVLTTFSSRKAAHVREISS
>Mature_390_residues
MFSTWKIYLLAIISFLVGTSEYIISGILDQIAHTLGITLAAAGQLITIFSLVYAVFTPVLMALTASMDRRKLMMYALGLF
VIGNILAFTLPGYGWFVAARVVMALGAGMVVVTALTIAAKIAPAGKQGSAIATVVMGFTASLIIGVPLGRMTAEALGWKS
VFGGIALLGFIAMIVLFLTLPHTEGDKPVPLLQQLSLLKKRKVAMGLSVTFFWLGGYSVAYTYLSPYLLTVSGISGNLLS
GVLLIFGIASLVGSKFGGYSTDKWGVPFTLVGGMALHIIALILLSLVTHSYVGVLLILILWSFAAWSTGPTQQYHLATLE
PELSGVLLGINQSMMQFAMAAGAGIGGIFVEKVSLASITWFGALGVMIAIVVVLTTFSSRKAAHVREISS

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=329, Percent_Identity=27.9635258358663, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1787808, Length=237, Percent_Identity=27.0042194092827, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1786595, Length=256, Percent_Identity=25.390625, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI145693198, Length=344, Percent_Identity=25, Blast_Score=90, Evalue=2e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41198; Mature: 41198

Theoretical pI: Translated: 10.09; Mature: 10.09

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSTWKIYLLAIISFLVGTSEYIISGILDQIAHTLGITLAAAGQLITIFSLVYAVFTPVL
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MALTASMDRRKLMMYALGLFVIGNILAFTLPGYGWFVAARVVMALGAGMVVVTALTIAAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
IAPAGKQGSAIATVVMGFTASLIIGVPLGRMTAEALGWKSVFGGIALLGFIAMIVLFLTL
HCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PHTEGDKPVPLLQQLSLLKKRKVAMGLSVTFFWLGGYSVAYTYLSPYLLTVSGISGNLLS
CCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHCCHHEEEECCCCHHHH
GVLLIFGIASLVGSKFGGYSTDKWGVPFTLVGGMALHIIALILLSLVTHSYVGVLLILIL
HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WSFAAWSTGPTQQYHLATLEPELSGVLLGINQSMMQFAMAAGAGIGGIFVEKVSLASITW
HHHHHCCCCCCCCEEEEECCCCCCCEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
FGALGVMIAIVVVLTTFSSRKAAHVREISS
HHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
>Mature Secondary Structure
MFSTWKIYLLAIISFLVGTSEYIISGILDQIAHTLGITLAAAGQLITIFSLVYAVFTPVL
CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MALTASMDRRKLMMYALGLFVIGNILAFTLPGYGWFVAARVVMALGAGMVVVTALTIAAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHH
IAPAGKQGSAIATVVMGFTASLIIGVPLGRMTAEALGWKSVFGGIALLGFIAMIVLFLTL
HCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PHTEGDKPVPLLQQLSLLKKRKVAMGLSVTFFWLGGYSVAYTYLSPYLLTVSGISGNLLS
CCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHCCHHEEEECCCCHHHH
GVLLIFGIASLVGSKFGGYSTDKWGVPFTLVGGMALHIIALILLSLVTHSYVGVLLILIL
HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WSFAAWSTGPTQQYHLATLEPELSGVLLGINQSMMQFAMAAGAGIGGIFVEKVSLASITW
HHHHHCCCCCCCCEEEEECCCCCCCEEECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
FGALGVMIAIVVVLTTFSSRKAAHVREISS
HHHHHHHHHHHHHHHHCCCCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]