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The map label for this gene is ybbM

Identifier: 52784028

GI number: 52784028

Start: 178695

End: 179315

Strand: Direct

Name: ybbM

Synonym: BLi00200

Alternate gene names: 52784028

Gene position: 178695-179315 (Clockwise)

Preceding gene: 52784027

Following gene: 52784029

Centisome position: 4.23

GC content: 47.34

Gene sequence:

>621_bases
ATGAGCTGTCCGGAGCATATTGTTCAGCTTATGCATAAATACCTTGACGGAGACATACTTCCGGAAGATGAAACGCGTTT
AAAAGAGCACCTCCAATCATGCGAAGGCTGCAAAAAGCACCTTCATGAAATGGAAAAATCCATCGCTCTTGTCCAGAGCA
CGTCGCATCTTACAGCTCCGGCGAACTTTACAGCCAATGTGCTGGCGAATCTGCCGAAAGAAAAGCGGACGGCATCGATC
AACAGGTGGCTTAAAGCCCATCCGTTTTTAGTGGCGGCGGCTTTATTTGCAATTTTGATGGGCGGCAGCTTTTTCTCCAG
CTGGAAAAACGATCACGATTTCAGCGTATCCAGCCAGCCTAATCTTGTGGTGAAAAACAACACGGTCATCGTGCCTGAAG
GCGAAGTTGTCAAAGGCGATGTGACCGTGAAAAACGGAAAGCTGATTATAGAGGGCAAAGTCGACGGCGATGTCACGATT
GTAAACGGTGAAAAATATACGGCTTCAGCAGGACAAGTCACCGGTCAGATCCATGAGATCAACGAGGTGTTCGACTGGAT
CTGGTATAAGATCAAATCGACCGGAAAATCGGTTTTTGGTGTGAAGGAGTCTAAAGAGTAG

Upstream 100 bases:

>100_bases
GAAATCCTCAATATTCCCGTAGGTACGGTGAAAACGAGGATACACAGGGGCAGAGAGGCTCTCAGAAAACAATTAAGGGA
TCTTTAAGTGGGGTGATGAA

Downstream 100 bases:

>100_bases
AGCAAAGCGGGCGAATGAGCTTTGCTCTTTTTTTATGAGGGGCCGCCATTTCACTTGGAAAATCAATTTGTGCTATAATA
GCCCCTGTATATATAAAAAT

Product: YbbM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MSCPEHIVQLMHKYLDGDILPEDETRLKEHLQSCEGCKKHLHEMEKSIALVQSTSHLTAPANFTANVLANLPKEKRTASI
NRWLKAHPFLVAAALFAILMGGSFFSSWKNDHDFSVSSQPNLVVKNNTVIVPEGEVVKGDVTVKNGKLIIEGKVDGDVTI
VNGEKYTASAGQVTGQIHEINEVFDWIWYKIKSTGKSVFGVKESKE

Sequences:

>Translated_206_residues
MSCPEHIVQLMHKYLDGDILPEDETRLKEHLQSCEGCKKHLHEMEKSIALVQSTSHLTAPANFTANVLANLPKEKRTASI
NRWLKAHPFLVAAALFAILMGGSFFSSWKNDHDFSVSSQPNLVVKNNTVIVPEGEVVKGDVTVKNGKLIIEGKVDGDVTI
VNGEKYTASAGQVTGQIHEINEVFDWIWYKIKSTGKSVFGVKESKE
>Mature_205_residues
SCPEHIVQLMHKYLDGDILPEDETRLKEHLQSCEGCKKHLHEMEKSIALVQSTSHLTAPANFTANVLANLPKEKRTASIN
RWLKAHPFLVAAALFAILMGGSFFSSWKNDHDFSVSSQPNLVVKNNTVIVPEGEVVKGDVTVKNGKLIIEGKVDGDVTIV
NGEKYTASAGQVTGQIHEINEVFDWIWYKIKSTGKSVFGVKESKE

Specific function: Is the anti-sigma factor for sigW. The presence of rsiW leads to the inactivation of sigW, and its proteolytic destruction to sigma-W activation

COG id: COG5662

COG function: function code K; Predicted transmembrane transcriptional regulator (anti-sigma factor)

Gene ontology:

Cell location: Membrane; Single-pass membrane protein. Note=Site-2 clipped rsiW is released from the membrane to the cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the anti-sigma-W factor family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RSIW_BACLD (Q65P50)

Other databases:

- EMBL:   AE017333
- EMBL:   CP000002
- RefSeq:   YP_077457.1
- RefSeq:   YP_089857.1
- ProteinModelPortal:   Q65P50
- STRING:   Q65P50
- EnsemblBacteria:   EBBACT00000058343
- EnsemblBacteria:   EBBACT00000059109
- GeneID:   3028987
- GeneID:   3098529
- GenomeReviews:   AE017333_GR
- GenomeReviews:   CP000002_GR
- KEGG:   bld:BLi00200
- KEGG:   bli:BL02700
- NMPDR:   fig|279010.5.peg.1778
- eggNOG:   COG5662
- GeneTree:   EBGT00050000002730
- HOGENOM:   HBG475306
- OMA:   YMASAGQ
- ProtClustDB:   CLSK872658
- BioCyc:   BLIC279010-1:BLI00200-MONOMER
- BioCyc:   BLIC279010:BL02700-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22828; Mature: 22697

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xc41f504)-;

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSCPEHIVQLMHKYLDGDILPEDETRLKEHLQSCEGCKKHLHEMEKSIALVQSTSHLTAP
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
ANFTANVLANLPKEKRTASINRWLKAHPFLVAAALFAILMGGSFFSSWKNDHDFSVSSQP
CCHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCC
NLVVKNNTVIVPEGEVVKGDVTVKNGKLIIEGKVDGDVTIVNGEKYTASAGQVTGQIHEI
CEEEECCEEEECCCCEEECCEEEECCEEEEEEECCCCEEEECCCEEECCCCHHHHHHHHH
NEVFDWIWYKIKSTGKSVFGVKESKE
HHHHHHHHHHHHHCCCEEECCCCCCH
>Mature Secondary Structure 
SCPEHIVQLMHKYLDGDILPEDETRLKEHLQSCEGCKKHLHEMEKSIALVQSTSHLTAP
CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
ANFTANVLANLPKEKRTASINRWLKAHPFLVAAALFAILMGGSFFSSWKNDHDFSVSSQP
CCHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCC
NLVVKNNTVIVPEGEVVKGDVTVKNGKLIIEGKVDGDVTIVNGEKYTASAGQVTGQIHEI
CEEEECCEEEECCCCEEECCEEEECCEEEEEEECCCCEEEECCCEEECCCCHHHHHHHHH
NEVFDWIWYKIKSTGKSVFGVKESKE
HHHHHHHHHHHHHCCCEEECCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA