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The map label for this gene is ybbE [H]

Identifier: 52784021

GI number: 52784021

Start: 170853

End: 172199

Strand: Reverse

Name: ybbE [H]

Synonym: BLi00188

Alternate gene names: 52784021

Gene position: 172199-170853 (Counterclockwise)

Preceding gene: 52784022

Following gene: 52784020

Centisome position: 4.08

GC content: 46.55

Gene sequence:

>1347_bases
ATGATCAGTGCGGCCGCGTCCCTATTGCTGCTGACATGCTTTTTTCCGCTTCCGTCCACAGCACAGACTGCCATCGGGAA
CGAGACAAAACAGCGGCTGACATATCCTGTTTTAACGAAAGCGAAAACGCCTGAAGAAGCCGGTTTTTCTTCGAAAAAGC
TTAAAGCTGTGGACCGTCTGATCGAACAGGATGTCAAAGCGGGCTTTCCCGGCGCTGCCCTTATTTTGATTAAAGACGGA
AAAATCATCAAAAAAGAAGTCTACGGCTACAAGCAGAAATACAACGGCCTCATAGCGCTCAAACATCCAAAAAAAATGAA
AGCAAACACGATGTTCGACCTAGCCTCCAATACAAAAATGTATGCCGTCAATTTTGCCTTGCAGCATTTAGTGAGCACCG
GAAAGCTTGACTTGAACAAAAACATTTCTCAATATCTCCCTGATTTCAAAGATCACCCGGAAGACGATGTAAAGGGAAAA
AACCGGCTCCGCGTGATTGATTTGCTTCATCATAACGCAGGCTTCCCTGCAAGCTGGAATTATTACGACCCGAAATCAGC
CGGACACCTCTACTCTCAATCACGGAGCAAAACGCTTGAATATCTTGTGAAAACCCCCTTGGCATATGAACCCGGCACAA
AGCAAATTTACAGTGACATCGACTATATGCTCCTCGGGCTGATCATTGAAAAAATCACAAACGAGCGTTTAGATACCTTT
GTTGAAAACCGGTTTTACCGGCCTCTCGGATTGCGGCATACTTTGTTTAATCCGCTCCAAAAGGGCTTTAAACGGTCGCA
TTTTGCAGCTACGGAACGATTGGGAAACACCAGAGACGGCACCATTTCGTTCCCAAACATCAGAACTTACACACTTCAGG
GGGAAGTCCACGATGAAAAAGCATTCTATTCAATGGAAGGCGTTTCTGGGCATGCCGGCCTGTTTTCCACCGTTGACGAC
GCAGCAGTGCTCCTTCAAGTCATGCTGAACGGCGGCGGTTACGGAAGACAGCATCTATTCAGCAGTTCTGTCATTTCACA
ATTTACAGAGCCGTCAAAAACAAATCCCACATATGGACTAGGATGGCGGCTCAACGGCAATACCGATATGGAGTGGATGT
TCGGCAAGCACGCCAGCAGCAAAGCATATGGCCATACCGGCTGGACGGGAACGGTTACTATCATTGATCCCGTGTATCAA
ATCGGCATTGTGTTGTTAACCAATAAAAAGCACTCTCCTGTTATCAACCCTAAAGAAAACCCGAATCAATTCGAAGGTGA
TGAATTTGCAACCGGAAAGTACGGCAGCGTCATTACAGCTGTTTACGAGGCGTTACATCACCAATAG

Upstream 100 bases:

>100_bases
TTCAAGGACGATATGGCAGTTGAATTTGATTAAACGTTTGTTTAAAATTTCCCACTATGCAATTTTTAACAGAAAGGAGT
GAAGCAAGCTGAAAAAGTTT

Downstream 100 bases:

>100_bases
GAGGCGACCCTTTATATGAAAAGATTTCTTCAATGCGCGTTGATTGCATTGCTGTTATCGTCTCTCGCTTTGCAGCCGGC
CGCTCGCGAAGCAGAAGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MISAAASLLLLTCFFPLPSTAQTAIGNETKQRLTYPVLTKAKTPEEAGFSSKKLKAVDRLIEQDVKAGFPGAALILIKDG
KIIKKEVYGYKQKYNGLIALKHPKKMKANTMFDLASNTKMYAVNFALQHLVSTGKLDLNKNISQYLPDFKDHPEDDVKGK
NRLRVIDLLHHNAGFPASWNYYDPKSAGHLYSQSRSKTLEYLVKTPLAYEPGTKQIYSDIDYMLLGLIIEKITNERLDTF
VENRFYRPLGLRHTLFNPLQKGFKRSHFAATERLGNTRDGTISFPNIRTYTLQGEVHDEKAFYSMEGVSGHAGLFSTVDD
AAVLLQVMLNGGGYGRQHLFSSSVISQFTEPSKTNPTYGLGWRLNGNTDMEWMFGKHASSKAYGHTGWTGTVTIIDPVYQ
IGIVLLTNKKHSPVINPKENPNQFEGDEFATGKYGSVITAVYEALHHQ

Sequences:

>Translated_448_residues
MISAAASLLLLTCFFPLPSTAQTAIGNETKQRLTYPVLTKAKTPEEAGFSSKKLKAVDRLIEQDVKAGFPGAALILIKDG
KIIKKEVYGYKQKYNGLIALKHPKKMKANTMFDLASNTKMYAVNFALQHLVSTGKLDLNKNISQYLPDFKDHPEDDVKGK
NRLRVIDLLHHNAGFPASWNYYDPKSAGHLYSQSRSKTLEYLVKTPLAYEPGTKQIYSDIDYMLLGLIIEKITNERLDTF
VENRFYRPLGLRHTLFNPLQKGFKRSHFAATERLGNTRDGTISFPNIRTYTLQGEVHDEKAFYSMEGVSGHAGLFSTVDD
AAVLLQVMLNGGGYGRQHLFSSSVISQFTEPSKTNPTYGLGWRLNGNTDMEWMFGKHASSKAYGHTGWTGTVTIIDPVYQ
IGIVLLTNKKHSPVINPKENPNQFEGDEFATGKYGSVITAVYEALHHQ
>Mature_448_residues
MISAAASLLLLTCFFPLPSTAQTAIGNETKQRLTYPVLTKAKTPEEAGFSSKKLKAVDRLIEQDVKAGFPGAALILIKDG
KIIKKEVYGYKQKYNGLIALKHPKKMKANTMFDLASNTKMYAVNFALQHLVSTGKLDLNKNISQYLPDFKDHPEDDVKGK
NRLRVIDLLHHNAGFPASWNYYDPKSAGHLYSQSRSKTLEYLVKTPLAYEPGTKQIYSDIDYMLLGLIIEKITNERLDTF
VENRFYRPLGLRHTLFNPLQKGFKRSHFAATERLGNTRDGTISFPNIRTYTLQGEVHDEKAFYSMEGVSGHAGLFSTVDD
AAVLLQVMLNGGGYGRQHLFSSSVISQFTEPSKTNPTYGLGWRLNGNTDMEWMFGKHASSKAYGHTGWTGTVTIIDPVYQ
IGIVLLTNKKHSPVINPKENPNQFEGDEFATGKYGSVITAVYEALHHQ

Specific function: Unknown

COG id: COG1680

COG function: function code V; Beta-lactamase class C and other penicillin binding proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0214 family [H]

Homologues:

Organism=Escherichia coli, GI87082101, Length=414, Percent_Identity=56.0386473429952, Blast_Score=490, Evalue=1e-140,
Organism=Caenorhabditis elegans, GI115533026, Length=397, Percent_Identity=23.4256926952141, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012338
- InterPro:   IPR001466
- InterPro:   IPR022849 [H]

Pfam domain/function: PF00144 Beta-lactamase [H]

EC number: NA

Molecular weight: Translated: 50112; Mature: 50112

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISAAASLLLLTCFFPLPSTAQTAIGNETKQRLTYPVLTKAKTPEEAGFSSKKLKAVDRL
CCCHHHHHHHHHHHCCCCCCHHHHHCCHHHHHCCCHHHCCCCCCHHCCCCHHHHHHHHHH
IEQDVKAGFPGAALILIKDGKIIKKEVYGYKQKYNGLIALKHPKKMKANTMFDLASNTKM
HHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCEEECCCCCEE
YAVNFALQHLVSTGKLDLNKNISQYLPDFKDHPEDDVKGKNRLRVIDLLHHNAGFPASWN
EEHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHCCCCCCEEEEEEECCCCCCCCCCC
YYDPKSAGHLYSQSRSKTLEYLVKTPLAYEPGTKQIYSDIDYMLLGLIIEKITNERLDTF
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VENRFYRPLGLRHTLFNPLQKGFKRSHFAATERLGNTRDGTISFPNIRTYTLQGEVHDEK
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEEEEECCCCCCH
AFYSMEGVSGHAGLFSTVDDAAVLLQVMLNGGGYGRQHLFSSSVISQFTEPSKTNPTYGL
HEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEE
GWRLNGNTDMEWMFGKHASSKAYGHTGWTGTVTIIDPVYQIGIVLLTNKKHSPVINPKEN
EEEECCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCHHHCCEEEEECCCCCCCCCCCCC
PNQFEGDEFATGKYGSVITAVYEALHHQ
CCCCCCCCCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MISAAASLLLLTCFFPLPSTAQTAIGNETKQRLTYPVLTKAKTPEEAGFSSKKLKAVDRL
CCCHHHHHHHHHHHCCCCCCHHHHHCCHHHHHCCCHHHCCCCCCHHCCCCHHHHHHHHHH
IEQDVKAGFPGAALILIKDGKIIKKEVYGYKQKYNGLIALKHPKKMKANTMFDLASNTKM
HHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCEEECCCCCEE
YAVNFALQHLVSTGKLDLNKNISQYLPDFKDHPEDDVKGKNRLRVIDLLHHNAGFPASWN
EEHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCHHCCCCCCEEEEEEECCCCCCCCCCC
YYDPKSAGHLYSQSRSKTLEYLVKTPLAYEPGTKQIYSDIDYMLLGLIIEKITNERLDTF
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VENRFYRPLGLRHTLFNPLQKGFKRSHFAATERLGNTRDGTISFPNIRTYTLQGEVHDEK
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCEEEEEEECCCCCCH
AFYSMEGVSGHAGLFSTVDDAAVLLQVMLNGGGYGRQHLFSSSVISQFTEPSKTNPTYGL
HEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEE
GWRLNGNTDMEWMFGKHASSKAYGHTGWTGTVTIIDPVYQIGIVLLTNKKHSPVINPKEN
EEEECCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCHHHCCEEEEECCCCCCCCCCCCC
PNQFEGDEFATGKYGSVITAVYEALHHQ
CCCCCCCCCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9274029; 9384377 [H]