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The map label for this gene is ydhD [H]

Identifier: 52783874

GI number: 52783874

Start: 27925

End: 29244

Strand: Reverse

Name: ydhD [H]

Synonym: BLi00025

Alternate gene names: 52783874

Gene position: 29244-27925 (Counterclockwise)

Preceding gene: 52783875

Following gene: 52783873

Centisome position: 0.69

GC content: 51.67

Gene sequence:

>1320_bases
ATGAGAAAGGAGGCGTTTCCCATTCAGATTTATGTCGTGAAAAGAGGCGATACCCTTTACCAAATCGCGAATCGTTACCG
AACAACAGTTAATGAAATTGTCGCGACGAATGAAATTCCGAACCCGAATCGGCTTGTTGTCGGACAAACCATCGTGATCC
CGATCGCCGGCGAGTTTTATGAGGTCAGACAGGGAGATACATTAGCATCAATCGGAGCACGCTTTAATATTTCTCCGGCT
GAACTGGCGAGGATCAACCGCATTCAGGTTAGCGCCGTTTTACCGGTCGGACTGCTGCTTTACATCCCCCCTCGGCCAAG
ACGGAACATTGAAACAAACGCCTATATCGAACCTCGGGGAGAAAGCGTAAGCCCCGCTTTGCAGCAGGCGGCAAGAGAGG
CTTCGCCATACTTGACCTATCTGGGCGCTTTCAGCTTCCAGGCGAAGCGGGACGGCACACTCGAAGAACCGCCGCTGAAC
AACTTAAAAGAAATTGCCGACAGACATCGGACTACGATGATGATGATTGTCACCAATCTCGAAAATGAAGCTTTCAGCGA
CGAACTCGGCAGGATCATTCTGACGGACCAGAATGTAAAAAACAGATTGCTCGATAACATCGTTGCAGCGGCCAGAAGAT
ACGGTTTTAAAGACATCCATTTTGACTTCGAATACTTAAGGCCCGAAGATAGAGAAGCCTATAATCAGTTTTTACGGGAT
GCCCGGGCCCGCTTCAGGCAGGAAGGCTGGCTCATCTCAACCGCGCTTGCTCCGAAAACGAGAGCGGATCAGCCCGGACA
ATGGTATGAAGCCCATGATTACCGGGCCCACGGCGAAATTGTCGATTTCGTCGTGCTGATGACATATGAGTGGGGCTACA
GCGGAGGGCCCCCGATGGCGGTATCGCCGATCGGGCCCGTCCGGGACGTGATCGAATACGCACTCACGGAAATGCCCGCC
AGCAAAATCGTCATGGGACAGAACTTGTACGGCTATGACTGGACGCTCCCCTATACGCCAGGCGGACCGCTGGCCAGAGC
AATCAGCCCCCAGCGGGCGATTGAGATCGCGAGCGAGAACAATGCGGCGATACAGTACGATGAAACAGCTCAGGCTCCAA
ACTTCCGCTATACGGACAATGCCGGCAAACAGCATGAAGTATGGTTTGAAGACGCCCGCTCGATTCAGGCAAAGTTTGAT
CTGATTAGGGAATTGAATTTAAGGGGAATCAGCTATTGGAAGCTCGGCCTGTCCTTCCCGCAAAACTGGCTCTTGATAGC
CGATCAATTTAATGTTGTTAAAGAGACGTTCCCAAGTTAA

Upstream 100 bases:

>100_bases
ATGATGGAAAATGTTCTGTTCGCCAATATCACGACGGCTAAGGCGATTACCTCCGAAACTTAGAGCATGAAACACTTCCT
TTCATCATATAGTGGTAGCA

Downstream 100 bases:

>100_bases
AGGAACGTTTTTTTTCATGGCAGCGGATGATGATGTGATACAATATGTATGGTTCACAAATGAATTTCTTTAGTAGGAGG
ACACCTATGAATACAGCCCC

Product: YdhD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MRKEAFPIQIYVVKRGDTLYQIANRYRTTVNEIVATNEIPNPNRLVVGQTIVIPIAGEFYEVRQGDTLASIGARFNISPA
ELARINRIQVSAVLPVGLLLYIPPRPRRNIETNAYIEPRGESVSPALQQAAREASPYLTYLGAFSFQAKRDGTLEEPPLN
NLKEIADRHRTTMMMIVTNLENEAFSDELGRIILTDQNVKNRLLDNIVAAARRYGFKDIHFDFEYLRPEDREAYNQFLRD
ARARFRQEGWLISTALAPKTRADQPGQWYEAHDYRAHGEIVDFVVLMTYEWGYSGGPPMAVSPIGPVRDVIEYALTEMPA
SKIVMGQNLYGYDWTLPYTPGGPLARAISPQRAIEIASENNAAIQYDETAQAPNFRYTDNAGKQHEVWFEDARSIQAKFD
LIRELNLRGISYWKLGLSFPQNWLLIADQFNVVKETFPS

Sequences:

>Translated_439_residues
MRKEAFPIQIYVVKRGDTLYQIANRYRTTVNEIVATNEIPNPNRLVVGQTIVIPIAGEFYEVRQGDTLASIGARFNISPA
ELARINRIQVSAVLPVGLLLYIPPRPRRNIETNAYIEPRGESVSPALQQAAREASPYLTYLGAFSFQAKRDGTLEEPPLN
NLKEIADRHRTTMMMIVTNLENEAFSDELGRIILTDQNVKNRLLDNIVAAARRYGFKDIHFDFEYLRPEDREAYNQFLRD
ARARFRQEGWLISTALAPKTRADQPGQWYEAHDYRAHGEIVDFVVLMTYEWGYSGGPPMAVSPIGPVRDVIEYALTEMPA
SKIVMGQNLYGYDWTLPYTPGGPLARAISPQRAIEIASENNAAIQYDETAQAPNFRYTDNAGKQHEVWFEDARSIQAKFD
LIRELNLRGISYWKLGLSFPQNWLLIADQFNVVKETFPS
>Mature_439_residues
MRKEAFPIQIYVVKRGDTLYQIANRYRTTVNEIVATNEIPNPNRLVVGQTIVIPIAGEFYEVRQGDTLASIGARFNISPA
ELARINRIQVSAVLPVGLLLYIPPRPRRNIETNAYIEPRGESVSPALQQAAREASPYLTYLGAFSFQAKRDGTLEEPPLN
NLKEIADRHRTTMMMIVTNLENEAFSDELGRIILTDQNVKNRLLDNIVAAARRYGFKDIHFDFEYLRPEDREAYNQFLRD
ARARFRQEGWLISTALAPKTRADQPGQWYEAHDYRAHGEIVDFVVLMTYEWGYSGGPPMAVSPIGPVRDVIEYALTEMPA
SKIVMGQNLYGYDWTLPYTPGGPLARAISPQRAIEIASENNAAIQYDETAQAPNFRYTDNAGKQHEVWFEDARSIQAKFD
LIRELNLRGISYWKLGLSFPQNWLLIADQFNVVKETFPS

Specific function: May be required for the L-alanine-stimulated germination pathway [H]

COG id: COG3858

COG function: function code R; Predicted glycosyl hydrolase

Gene ontology:

Cell location: Spore wall (Probable). Note=Probably localized either on the surface of the outer spore membrane and/or in the inner spore coat [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011583
- InterPro:   IPR001223
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF00704 Glyco_hydro_18; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 49997; Mature: 49997

Theoretical pI: Translated: 5.82; Mature: 5.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKEAFPIQIYVVKRGDTLYQIANRYRTTVNEIVATNEIPNPNRLVVGQTIVIPIAGEFY
CCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEECCCEE
EVRQGDTLASIGARFNISPAELARINRIQVSAVLPVGLLLYIPPRPRRNIETNAYIEPRG
ECCCCCCHHHCCCCCCCCHHHHHHHCEEEEEEECCCCEEEEECCCCCCCCCCCCEECCCC
ESVSPALQQAAREASPYLTYLGAFSFQAKRDGTLEEPPLNNLKEIADRHRTTMMMIVTNL
CCCCHHHHHHHHHCCCCEEEHHCEEEECCCCCCCCCCCCHHHHHHHHHHHEEEEEEEECC
ENEAFSDELGRIILTDQNVKNRLLDNIVAAARRYGFKDIHFDFEYLRPEDREAYNQFLRD
CCHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCHHHHHHHHHH
ARARFRQEGWLISTALAPKTRADQPGQWYEAHDYRAHGEIVDFVVLMTYEWGYSGGPPMA
HHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHEEEEEEEEECCCCCCCCEE
VSPIGPVRDVIEYALTEMPASKIVMGQNLYGYDWTLPYTPGGPLARAISPQRAIEIASEN
ECCCCHHHHHHHHHHHHCCHHHEEECCCCCCCCEECCCCCCCCHHHHCCHHHHEEEECCC
NAAIQYDETAQAPNFRYTDNAGKQHEVWFEDARSIQAKFDLIRELNLRGISYWKLGLSFP
CCEEEECCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
QNWLLIADQFNVVKETFPS
CCEEEEECCHHHHHHHCCC
>Mature Secondary Structure
MRKEAFPIQIYVVKRGDTLYQIANRYRTTVNEIVATNEIPNPNRLVVGQTIVIPIAGEFY
CCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEECCCEE
EVRQGDTLASIGARFNISPAELARINRIQVSAVLPVGLLLYIPPRPRRNIETNAYIEPRG
ECCCCCCHHHCCCCCCCCHHHHHHHCEEEEEEECCCCEEEEECCCCCCCCCCCCEECCCC
ESVSPALQQAAREASPYLTYLGAFSFQAKRDGTLEEPPLNNLKEIADRHRTTMMMIVTNL
CCCCHHHHHHHHHCCCCEEEHHCEEEECCCCCCCCCCCCHHHHHHHHHHHEEEEEEEECC
ENEAFSDELGRIILTDQNVKNRLLDNIVAAARRYGFKDIHFDFEYLRPEDREAYNQFLRD
CCHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEEECHHHCCCCCHHHHHHHHHH
ARARFRQEGWLISTALAPKTRADQPGQWYEAHDYRAHGEIVDFVVLMTYEWGYSGGPPMA
HHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHEEEEEEEEECCCCCCCCEE
VSPIGPVRDVIEYALTEMPASKIVMGQNLYGYDWTLPYTPGGPLARAISPQRAIEIASEN
ECCCCHHHHHHHHHHHHCCHHHEEECCCCCCCCEECCCCCCCCHHHHCCHHHHEEEECCC
NAAIQYDETAQAPNFRYTDNAGKQHEVWFEDARSIQAKFDLIRELNLRGISYWKLGLSFP
CCEEEECCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
QNWLLIADQFNVVKETFPS
CCEEEEECCHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7584024; 9384377; 10419957 [H]