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The map label for this gene is abrB [H]

Identifier: 52143421

GI number: 52143421

Start: 1940030

End: 1940317

Strand: Direct

Name: abrB [H]

Synonym: BCZK1812

Alternate gene names: 52143421

Gene position: 1940030-1940317 (Clockwise)

Preceding gene: 52143423

Following gene: 52143422

Centisome position: 36.6

GC content: 30.56

Gene sequence:

>288_bases
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCCTTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGTTTAG

Upstream 100 bases:

>100_bases
TGAGTACAAAATTTTCTAAAAAGAGGCAGGTATTACCAAAAAGTGATAAAATGGAAAAAGCGAGGTGGAAAATTTAATAA
AAAGTAAGGGAGGAAGTAAT

Downstream 100 bases:

>100_bases
TCTTAATTTATATTATTTTAAAAATTTCATATCATTCTTTAAAGACAATAAAAGGACCAATTTAGTGGTCCTTTTATTTT
GGTTATTGGTTGTACCAATC

Product: transition state regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 95

Protein sequence:

>95_residues
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEV

Sequences:

>Translated_95_residues
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEV
>Mature_95_residues
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEV

Specific function: Ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. It controls the expression of genes spovG and tycA. AbrB binds to the tycA

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis abh and spoVT [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006339
- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 10646; Mature: 10646

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDV
CCCCHHHHHHHHCCCEECCHHHHHHHCEECCCCEEEEECCCCEEEECCCCCCEEEEEECC
SNQNISLANGNITVSIDGAKYLIKEIEKFLNKSEV
CCCEEEEECCEEEEEECCHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDV
CCCCHHHHHHHHCCCEECCHHHHHHHCEECCCCEEEEECCCCEEEECCCCCCEEEEEECC
SNQNISLANGNITVSIDGAKYLIKEIEKFLNKSEV
CCCEEEEECCEEEEEECCHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3145384; 2554317; 7584024; 9384377; 2504584; 1908787 [H]