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The map label for this gene is ywqM [H]

Identifier: 52143055

GI number: 52143055

Start: 2311501

End: 2312373

Strand: Reverse

Name: ywqM [H]

Synonym: BCZK2184

Alternate gene names: 52143055

Gene position: 2312373-2311501 (Counterclockwise)

Preceding gene: 52143051

Following gene: 52143058

Centisome position: 43.62

GC content: 34.14

Gene sequence:

>873_bases
ATGGAAATGAGACATGTTAAAACATTTTGTGCGATTGTTAAGTATGGTAGTTTTTCTAAAGCTGCCCATGCATTAGGTTA
TGCGCAATCTACAGTTACAGCGCATATGAAAGCATTAGAGAACGATTTACATATTCCTCTTTTCGATCGGTTAGGAAAAA
AAGTACTTCTTACAAAAGCAGGTCATCAATTTCATCCTTATGCTTTAGAATTACTTGCAATTTATGAAAAGGCGCAAGAA
ATCCCCCAAAATACCGATCAATTAGAAGGTACATTGAGTATTACATCAAACGAATCATTAGCAGTATATCGTTTACCACA
ATTATTACGTACTTACAAACAGAAAAATCCGAAAGTAAATATCGTGCTTGAAACAAACACAAATGAACAAGCATTACAAA
AATTACATGAAGGAGAAACAGACGTTGTCTTCATAATTGGAGAAAGTATAAAACATAATGATTTTATTACTCGTACTTTT
AGTAATGAAACATTTGGATGGATTTTACCTATTCATTCCCCTATACACGCTAATCCGTTGCGTTTATTACAGGACACCCA
GTTTATTTTTACTGAACAAAGCTGCGGCTATAGACCGATAGTAGATCGTTTTTTACGTCAAAGCGGGCATTTTCCAGAGA
AAACATTTGAAACTTCCAACGTTGAAGTCATTAAACAATCCGTTATGTGTGAGTTAGGAATTTCAATTCTTCCTTACATC
GTTGTACAAGAAAATTGTCAAAAGGAACAAATACGATTTCACCCTATCGAAACTCCGTCTGTTATTCAAAGTCATGTAAT
CTATCATAAATCTAGATGGATCTCCCCTGTAGTCCAGTCGTTTCTTTCGCAATTAAAGGTAATGAAAGTATAA

Upstream 100 bases:

>100_bases
TATTTCTACAATTTCATTTTATAAGGAATTTAATCATTTGGAAAATTGAAATACGTGATATAATCATTCACAAATCATGA
TAATAAAAGAGGGATTGCTT

Downstream 100 bases:

>100_bases
AATAATATGAAAGAAAACATGAGTTGAAATCCTTTGAAGAATATCAACCCATGTTTTCTTTCATACTAATTAAATAGTCA
TCTTCTTTTTATTAGATAAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 290

Protein sequence:

>290_residues
MEMRHVKTFCAIVKYGSFSKAAHALGYAQSTVTAHMKALENDLHIPLFDRLGKKVLLTKAGHQFHPYALELLAIYEKAQE
IPQNTDQLEGTLSITSNESLAVYRLPQLLRTYKQKNPKVNIVLETNTNEQALQKLHEGETDVVFIIGESIKHNDFITRTF
SNETFGWILPIHSPIHANPLRLLQDTQFIFTEQSCGYRPIVDRFLRQSGHFPEKTFETSNVEVIKQSVMCELGISILPYI
VVQENCQKEQIRFHPIETPSVIQSHVIYHKSRWISPVVQSFLSQLKVMKV

Sequences:

>Translated_290_residues
MEMRHVKTFCAIVKYGSFSKAAHALGYAQSTVTAHMKALENDLHIPLFDRLGKKVLLTKAGHQFHPYALELLAIYEKAQE
IPQNTDQLEGTLSITSNESLAVYRLPQLLRTYKQKNPKVNIVLETNTNEQALQKLHEGETDVVFIIGESIKHNDFITRTF
SNETFGWILPIHSPIHANPLRLLQDTQFIFTEQSCGYRPIVDRFLRQSGHFPEKTFETSNVEVIKQSVMCELGISILPYI
VVQENCQKEQIRFHPIETPSVIQSHVIYHKSRWISPVVQSFLSQLKVMKV
>Mature_290_residues
MEMRHVKTFCAIVKYGSFSKAAHALGYAQSTVTAHMKALENDLHIPLFDRLGKKVLLTKAGHQFHPYALELLAIYEKAQE
IPQNTDQLEGTLSITSNESLAVYRLPQLLRTYKQKNPKVNIVLETNTNEQALQKLHEGETDVVFIIGESIKHNDFITRTF
SNETFGWILPIHSPIHANPLRLLQDTQFIFTEQSCGYRPIVDRFLRQSGHFPEKTFETSNVEVIKQSVMCELGISILPYI
VVQENCQKEQIRFHPIETPSVIQSHVIYHKSRWISPVVQSFLSQLKVMKV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082132, Length=289, Percent_Identity=29.0657439446367, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI1788481, Length=286, Percent_Identity=28.3216783216783, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1787806, Length=289, Percent_Identity=22.8373702422145, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI157672245, Length=290, Percent_Identity=23.1034482758621, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788887, Length=290, Percent_Identity=26.2068965517241, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788748, Length=244, Percent_Identity=23.3606557377049, Blast_Score=85, Evalue=6e-18,
Organism=Escherichia coli, GI1787879, Length=295, Percent_Identity=27.4576271186441, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790208, Length=292, Percent_Identity=25.3424657534247, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790399, Length=264, Percent_Identity=23.4848484848485, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI145693105, Length=291, Percent_Identity=25.4295532646048, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787601, Length=142, Percent_Identity=27.4647887323944, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1790783, Length=303, Percent_Identity=24.4224422442244, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1787530, Length=297, Percent_Identity=19.5286195286195, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI48994962, Length=158, Percent_Identity=29.1139240506329, Blast_Score=62, Evalue=4e-11,
Organism=Escherichia coli, GI1788296, Length=230, Percent_Identity=24.3478260869565, Blast_Score=61, Evalue=1e-10,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33269; Mature: 33269

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMRHVKTFCAIVKYGSFSKAAHALGYAQSTVTAHMKALENDLHIPLFDRLGKKVLLTKA
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEECC
GHQFHPYALELLAIYEKAQEIPQNTDQLEGTLSITSNESLAVYRLPQLLRTYKQKNPKVN
CCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCEEEHHHHHHHHHHHHCCCCEE
IVLETNTNEQALQKLHEGETDVVFIIGESIKHNDFITRTFSNETFGWILPIHSPIHANPL
EEEECCCCHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCCCCEEEEECCCCCCCCHH
RLLQDTQFIFTEQSCGYRPIVDRFLRQSGHFPEKTFETSNVEVIKQSVMCELGISILPYI
HHHHCCEEEEECCCCCCCHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHH
VVQENCQKEQIRFHPIETPSVIQSHVIYHKSRWISPVVQSFLSQLKVMKV
HHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEMRHVKTFCAIVKYGSFSKAAHALGYAQSTVTAHMKALENDLHIPLFDRLGKKVLLTKA
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCEEEEECC
GHQFHPYALELLAIYEKAQEIPQNTDQLEGTLSITSNESLAVYRLPQLLRTYKQKNPKVN
CCCCCHHHHHHHHHHHHHHHCCCCHHHCCEEEEEECCCCEEEHHHHHHHHHHHHCCCCEE
IVLETNTNEQALQKLHEGETDVVFIIGESIKHNDFITRTFSNETFGWILPIHSPIHANPL
EEEECCCCHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECCCCCEEEEECCCCCCCCHH
RLLQDTQFIFTEQSCGYRPIVDRFLRQSGHFPEKTFETSNVEVIKQSVMCELGISILPYI
HHHHCCEEEEECCCCCCCHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHH
VVQENCQKEQIRFHPIETPSVIQSHVIYHKSRWISPVVQSFLSQLKVMKV
HHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]