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The map label for this gene is yjhR [C]

Identifier: 52142333

GI number: 52142333

Start: 3037631

End: 3039910

Strand: Reverse

Name: yjhR [C]

Synonym: BCZK2909

Alternate gene names: 52142333

Gene position: 3039910-3037631 (Counterclockwise)

Preceding gene: 52142331

Following gene: 52142335

Centisome position: 57.35

GC content: 38.86

Gene sequence:

>2280_bases
ATGAACACACCTACTCAAACTCCTTCATTATCGGAAACGATGAAAGAGTGGCATTATGCATTAGCATATGAAATTAAACA
TTGGAAAACGATAGGTGGTAGTAAAATTTCTATCATGAACGGTCGTTTTTTATATACAGATTATGAGAATACAGTATACG
TATTTCAGCTTATTTCGGAAGTAAGCTTACCTGAAGGTTCACCGATTCGAATTGAGTTTGATGGTGAGGAAGCGACAGGA
GAAGTATTATCTGTACATGGATTAGAAATAGAACTGAAATTAAATGATTATATACAAGGTGAAATACGGGAAGCTGTTTT
ATATAGTGAACCGTGGCAGCTTTTAGAGCAACTACAAGAGAGGTTGAAGGAAGCGCGTAAAGATAAGCTAAAACGTAATC
GTATAAAGCGTCTTGTTGATGGGACGAGCAGTCCGAAACATATCGAGAAGATGAAAAACCCGAAAAATGAATTGGCGTAT
CGCGCGTTTTATAATCCGACAACGTACGTATGGGGACCACCTGGAACAGGGAAGTCTTACAATTTATCACGCATTATTTC
GGCTCATTATCAAAAAGGAAAGTCGGTACTTGTGTTAGCTCATAGTAACGCAGCAGTGGACGTATTAATGAGTGAAGTAA
CGAAGCAAATTGAAAAGAAAAAGAAATGGACACCTGGCGAAATTGTTCGTTACGGTTATAGTCAACATGAACATATACGA
AATCATGAAACGTTACTTGCGTCGAAGTTAGTTGAAACGACGAACGGATCTTGGGGTGAGGAAAGACTCTATTTAGAAGA
AACACGCCAAGAGCTTCGTGAAAAAATCTTATCGTATAAAGCAACATCTGCTGATAAGAAGCGTATGCAGGAGATTGAAA
GTGATCTTCGAAAACAGAGAGCGAAAATTAAAGAAGTAGAAAAAGAATACATTGAAAATGCGAAAGTAATCGGCGCAACT
TTATCGAAATGTGCCATTGATTCACTTATTTATGAGCGTACATTTGATTTAGTTGTCGTAGATGAAGTGAGTATGGCGTT
CGTTCCGCAAATTGCATTAGCTGCTTCACTTGGAAAACGTATCGTCGTTTGTGGTGACTTTTTACAGTTACCTCCAATTG
CGATGGCAAACCATGAACTCGTTCGAAAATGGCTCGGCGAAGATATGTTTTACCATGCTGGGATTGTTGAGTCTGTCAAT
AAATCAGAAGCACATCCGAACCTATTTATGTTGCAGGAACAAAGACGTATGCATGCGGATATATCGAAGTTTACGAATTC
GTTTATTTATAAAAATAGGGTATATGATCATCCATCAGTTTCAGAACGTAAAGAACTTGCACAATTGCAGCCATTCGCAA
AGGAAGCGAGTGTTTTATTTGATACGAGCCAAATGGGGGCCTTTTCGTTAAAAGATGCTGCTTCAGGATCTCGTTTTAAC
ATTATGTCTGGTTTAGTAGCAATGCAAATGATGTTAATCGGACTGTTAGATGGTGTGCAATCCATTGGTGTTGTGACGCC
TTATAGAGCGCAGTCTCGCTTTTTATCAACGTGTATTAGAGAGATGTTACAGAGAACAAAATACCAAAACATACCAGTTT
TAGCGGCGACAGTTCATAAATTCCAAGGATCTGAAAGAGATATGATGATCTTTGATACGGTTGACAGTTATCCGCAAGAA
CGACCTGGCGTTTTATTCTTTGACCATAAAAATCATCGTCTCGTCAACGTTGCTGTGACAAGGGCGAGAGGGAAGTTCAT
TCAATTATCAGATTGTCATTATATGCGTAAAAACCTTTCGAGAAAACAAGCGTTGTCACAATTAACGGCTCATATAGAAC
GCCACGGAGATGTGTATGATCGCACGACATCAAGACAATTGTGGGAGCGAAAAATATCGAAACGATTACGTTGGTTTATG
GAAATGAATCTGGAAGAGCCGAAAGGGCTATTAAAAGATATTTTAGCTGCAAAACGAAAAATCGTGATTTCACTTCCAAG
TACAAAACAAGTGGATAAACGAGTGTGGCAAGCGTTAATGCGTACAAATGCGCAAATAACGGTGTATAGTGATGGACCAG
TTCCACTGAAAAATGTAAAGTTACAAAGACAAAATAAAGCATTCCCGTTTATCGTAATCGATGATGAAATCTTTTGGGCA
GGGGCGCCCCTCACATCTCAAATGATGTTTGAAGGCAGTACAGAATTTCCATACGTATGTGCAAGACTGCAAGCACCTGA
GACAATTGGTGTATTAAAAGGATTTTTAGATATTCGGTAA

Upstream 100 bases:

>100_bases
GAAAATTAAGAAAATAAGCAAGATAAAAACCTTACAAATTTTAGCGTGTTATATGGTATAGTGAGAAAGTATGTTTGGGG
AGAAGGAAGGAGATTATACG

Downstream 100 bases:

>100_bases
ATTCGGATAGGAATTCCTTGACTTTTATTTGGAATGAACTTAGAATGAATGTAATTTAATATAATTTTATGAAAATTCTT
ATCACGAGAGGTGGAGGGAC

Product: DNA helicase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 759; Mature: 759

Protein sequence:

>759_residues
MNTPTQTPSLSETMKEWHYALAYEIKHWKTIGGSKISIMNGRFLYTDYENTVYVFQLISEVSLPEGSPIRIEFDGEEATG
EVLSVHGLEIELKLNDYIQGEIREAVLYSEPWQLLEQLQERLKEARKDKLKRNRIKRLVDGTSSPKHIEKMKNPKNELAY
RAFYNPTTYVWGPPGTGKSYNLSRIISAHYQKGKSVLVLAHSNAAVDVLMSEVTKQIEKKKKWTPGEIVRYGYSQHEHIR
NHETLLASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRMQEIESDLRKQRAKIKEVEKEYIENAKVIGAT
LSKCAIDSLIYERTFDLVVVDEVSMAFVPQIALAASLGKRIVVCGDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVN
KSEAHPNLFMLQEQRRMHADISKFTNSFIYKNRVYDHPSVSERKELAQLQPFAKEASVLFDTSQMGAFSLKDAASGSRFN
IMSGLVAMQMMLIGLLDGVQSIGVVTPYRAQSRFLSTCIREMLQRTKYQNIPVLAATVHKFQGSERDMMIFDTVDSYPQE
RPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMRKNLSRKQALSQLTAHIERHGDVYDRTTSRQLWERKISKRLRWFM
EMNLEEPKGLLKDILAAKRKIVISLPSTKQVDKRVWQALMRTNAQITVYSDGPVPLKNVKLQRQNKAFPFIVIDDEIFWA
GAPLTSQMMFEGSTEFPYVCARLQAPETIGVLKGFLDIR

Sequences:

>Translated_759_residues
MNTPTQTPSLSETMKEWHYALAYEIKHWKTIGGSKISIMNGRFLYTDYENTVYVFQLISEVSLPEGSPIRIEFDGEEATG
EVLSVHGLEIELKLNDYIQGEIREAVLYSEPWQLLEQLQERLKEARKDKLKRNRIKRLVDGTSSPKHIEKMKNPKNELAY
RAFYNPTTYVWGPPGTGKSYNLSRIISAHYQKGKSVLVLAHSNAAVDVLMSEVTKQIEKKKKWTPGEIVRYGYSQHEHIR
NHETLLASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRMQEIESDLRKQRAKIKEVEKEYIENAKVIGAT
LSKCAIDSLIYERTFDLVVVDEVSMAFVPQIALAASLGKRIVVCGDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVN
KSEAHPNLFMLQEQRRMHADISKFTNSFIYKNRVYDHPSVSERKELAQLQPFAKEASVLFDTSQMGAFSLKDAASGSRFN
IMSGLVAMQMMLIGLLDGVQSIGVVTPYRAQSRFLSTCIREMLQRTKYQNIPVLAATVHKFQGSERDMMIFDTVDSYPQE
RPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMRKNLSRKQALSQLTAHIERHGDVYDRTTSRQLWERKISKRLRWFM
EMNLEEPKGLLKDILAAKRKIVISLPSTKQVDKRVWQALMRTNAQITVYSDGPVPLKNVKLQRQNKAFPFIVIDDEIFWA
GAPLTSQMMFEGSTEFPYVCARLQAPETIGVLKGFLDIR
>Mature_759_residues
MNTPTQTPSLSETMKEWHYALAYEIKHWKTIGGSKISIMNGRFLYTDYENTVYVFQLISEVSLPEGSPIRIEFDGEEATG
EVLSVHGLEIELKLNDYIQGEIREAVLYSEPWQLLEQLQERLKEARKDKLKRNRIKRLVDGTSSPKHIEKMKNPKNELAY
RAFYNPTTYVWGPPGTGKSYNLSRIISAHYQKGKSVLVLAHSNAAVDVLMSEVTKQIEKKKKWTPGEIVRYGYSQHEHIR
NHETLLASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRMQEIESDLRKQRAKIKEVEKEYIENAKVIGAT
LSKCAIDSLIYERTFDLVVVDEVSMAFVPQIALAASLGKRIVVCGDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVN
KSEAHPNLFMLQEQRRMHADISKFTNSFIYKNRVYDHPSVSERKELAQLQPFAKEASVLFDTSQMGAFSLKDAASGSRFN
IMSGLVAMQMMLIGLLDGVQSIGVVTPYRAQSRFLSTCIREMLQRTKYQNIPVLAATVHKFQGSERDMMIFDTVDSYPQE
RPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMRKNLSRKQALSQLTAHIERHGDVYDRTTSRQLWERKISKRLRWFM
EMNLEEPKGLLKDILAAKRKIVISLPSTKQVDKRVWQALMRTNAQITVYSDGPVPLKNVKLQRQNKAFPFIVIDDEIFWA
GAPLTSQMMFEGSTEFPYVCARLQAPETIGVLKGFLDIR

Specific function: Unknown

COG id: COG1112

COG function: function code L; Superfamily I DNA and RNA helicases and helicase subunits

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DNA2/NAM7 helicase family [H]

Homologues:

Organism=Homo sapiens, GI18375673, Length=426, Percent_Identity=27.2300469483568, Blast_Score=102, Evalue=1e-21,
Organism=Homo sapiens, GI119392094, Length=474, Percent_Identity=26.7932489451477, Blast_Score=100, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI71981659, Length=467, Percent_Identity=24.6252676659529, Blast_Score=99, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17510163, Length=456, Percent_Identity=26.7543859649123, Blast_Score=93, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17533987, Length=353, Percent_Identity=24.3626062322946, Blast_Score=72, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17533985, Length=353, Percent_Identity=24.3626062322946, Blast_Score=71, Evalue=2e-12,
Organism=Saccharomyces cerevisiae, GI6322835, Length=495, Percent_Identity=25.4545454545455, Blast_Score=95, Evalue=5e-20,
Organism=Saccharomyces cerevisiae, GI6323726, Length=467, Percent_Identity=24.4111349036403, Blast_Score=86, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6323462, Length=503, Percent_Identity=23.8568588469185, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI18859757, Length=454, Percent_Identity=27.0925110132159, Blast_Score=110, Evalue=3e-24,
Organism=Drosophila melanogaster, GI24660647, Length=455, Percent_Identity=23.0769230769231, Blast_Score=81, Evalue=3e-15,
Organism=Drosophila melanogaster, GI221330969, Length=455, Percent_Identity=23.0769230769231, Blast_Score=81, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014001
- InterPro:   IPR004483 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 87252; Mature: 87252

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTPTQTPSLSETMKEWHYALAYEIKHWKTIGGSKISIMNGRFLYTDYENTVYVFQLISE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCEEEEECCCCCCHHHHHHHH
VSLPEGSPIRIEFDGEEATGEVLSVHGLEIELKLNDYIQGEIREAVLYSEPWQLLEQLQE
HCCCCCCEEEEEECCCCCCCCEEEEECEEEEEEECCHHHHHHHHHHHHCCHHHHHHHHHH
RLKEARKDKLKRNRIKRLVDGTSSPKHIEKMKNPKNELAYRAFYNPTTYVWGPPGTGKSY
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHEEEEECCCCEEEECCCCCCCCC
NLSRIISAHYQKGKSVLVLAHSNAAVDVLMSEVTKQIEKKKKWTPGEIVRYGYSQHEHIR
CHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHH
NHETLLASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRMQEIESDLRKQR
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
AKIKEVEKEYIENAKVIGATLSKCAIDSLIYERTFDLVVVDEVSMAFVPQIALAASLGKR
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHCCCE
IVVCGDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVNKSEAHPNLFMLQEQRRMHAD
EEEECCHHHCCCCHHCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHH
ISKFTNSFIYKNRVYDHPSVSERKELAQLQPFAKEASVLFDTSQMGAFSLKDAASGSRFN
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHEEECCCCCCEEEHHCCCCCCHH
IMSGLVAMQMMLIGLLDGVQSIGVVTPYRAQSRFLSTCIREMLQRTKYQNIPVLAATVHK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
FQGSERDMMIFDTVDSYPQERPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMRKNLS
HCCCCCCEEEEECHHCCCCCCCCEEEEECCCCEEEEEEEEECCCCEEEECCHHHHHHCCH
RKQALSQLTAHIERHGDVYDRTTSRQLWERKISKRLRWFMEMNLEEPKGLLKDILAAKRK
HHHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCE
IVISLPSTKQVDKRVWQALMRTNAQITVYSDGPVPLKNVKLQRQNKAFPFIVIDDEIFWA
EEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHCCEEECCCCCCCEEEECCCEEEC
GAPLTSQMMFEGSTEFPYVCARLQAPETIGVLKGFLDIR
CCCHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MNTPTQTPSLSETMKEWHYALAYEIKHWKTIGGSKISIMNGRFLYTDYENTVYVFQLISE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEEECCEEEEECCCCCCHHHHHHHH
VSLPEGSPIRIEFDGEEATGEVLSVHGLEIELKLNDYIQGEIREAVLYSEPWQLLEQLQE
HCCCCCCEEEEEECCCCCCCCEEEEECEEEEEEECCHHHHHHHHHHHHCCHHHHHHHHHH
RLKEARKDKLKRNRIKRLVDGTSSPKHIEKMKNPKNELAYRAFYNPTTYVWGPPGTGKSY
HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHEEEEECCCCEEEECCCCCCCCC
NLSRIISAHYQKGKSVLVLAHSNAAVDVLMSEVTKQIEKKKKWTPGEIVRYGYSQHEHIR
CHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHH
NHETLLASKLVETTNGSWGEERLYLEETRQELREKILSYKATSADKKRMQEIESDLRKQR
HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
AKIKEVEKEYIENAKVIGATLSKCAIDSLIYERTFDLVVVDEVSMAFVPQIALAASLGKR
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHCCCE
IVVCGDFLQLPPIAMANHELVRKWLGEDMFYHAGIVESVNKSEAHPNLFMLQEQRRMHAD
EEEECCHHHCCCCHHCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHH
ISKFTNSFIYKNRVYDHPSVSERKELAQLQPFAKEASVLFDTSQMGAFSLKDAASGSRFN
HHHHHHHHHHHCCCCCCCCHHHHHHHHHHCHHHHHHHHEEECCCCCCEEEHHCCCCCCHH
IMSGLVAMQMMLIGLLDGVQSIGVVTPYRAQSRFLSTCIREMLQRTKYQNIPVLAATVHK
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
FQGSERDMMIFDTVDSYPQERPGVLFFDHKNHRLVNVAVTRARGKFIQLSDCHYMRKNLS
HCCCCCCEEEEECHHCCCCCCCCEEEEECCCCEEEEEEEEECCCCEEEECCHHHHHHCCH
RKQALSQLTAHIERHGDVYDRTTSRQLWERKISKRLRWFMEMNLEEPKGLLKDILAAKRK
HHHHHHHHHHHHHHCCCHHHCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCE
IVISLPSTKQVDKRVWQALMRTNAQITVYSDGPVPLKNVKLQRQNKAFPFIVIDDEIFWA
EEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHCCEEECCCCCCCEEEECCCEEEC
GAPLTSQMMFEGSTEFPYVCARLQAPETIGVLKGFLDIR
CCCHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]