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The map label for this gene is ykgB [H]

Identifier: 52142168

GI number: 52142168

Start: 3204256

End: 3205320

Strand: Reverse

Name: ykgB [H]

Synonym: BCZK3077

Alternate gene names: 52142168

Gene position: 3205320-3204256 (Counterclockwise)

Preceding gene: 52142163

Following gene: 52142167

Centisome position: 60.47

GC content: 34.84

Gene sequence:

>1065_bases
ATGAAAATGAAGGATAACAAAGAGTTTATTGGATATGTTGGAACATACACGAAAGAAAATAGTGAAGGAATATATAAGTT
TACGTTAGACACGGAAGCAAAGAAAATTAGTAATGTAACACTTGCGGCCAAGTTGGATAACCCTACATATGTAACGATTA
ATCGAAATAATGAATATCTCTACTCTGTTGTTAAGGAAGGCGAATCTGGTGGTGTAGCTGCTTATTCGATTAATAGTAAA
ACTGGAGAGCTAATAGAAGAAAACAGACAAGTAGTAGAAGGGGCTTCTCCTTGTCATGTGAGTGTTGATAGTGGAAATCA
TACGGTAGTTACAGCAAATTACCATAAAGGAACGATTGAATCTTTTGAAGTAAATGAAGATGGAACTATAAATCCTGCTA
CATCGATTATGGCACATGAAGGTTCAGGTCCGAATAAAGAAAGACAAGAAAAACCACATGCACATTATGCGGGATATACT
CCTGATGAAAAATATGTAGTGGGTGTTGATTTAGGGATAGATAAAATAATTACGTATGAAATAAAAGATAGTACATTAAC
AGAAGTGAATCGTTTATCTGTAAATCCAGGGAGTGGTCCAAGACATATTACTTTTCATCCAAATGGAAAGTATGCGTATG
TGATGACGGAGCTTAGTTCAGAAGTTATTGTGTTGACATATAATCCGGCAGAAGGATCATTTACAGAATTACAGTATATT
TCTACTGTTCCAGAAGAGTTTGATGAAAATAATCAAGGAAGTGCAATTCATATTTCTTCTGATGGTCGCTTTGTATATGC
AGGTAATCGTGGTCATAATAGTATTGCTGTTTTCAGTGTTGATCAAAACACAGGCAAGCTTACATTTGTTGCACATACAT
CTACAGAAGGAAATTGGCCAAGAGACTTTGTATTAGATCCTACTGAAAAGTTTCTTGTTGCTACAAATGAAAAGTCACAT
AATCTTGTACTATTTTCAAGAAGTGAATCTACAGGTGAGCTAACTCTTTTACAATCTGACGTTGTTGTGCCAGAGCCTGT
TTGTGTTAAGTTTTTAAATGTTTAA

Upstream 100 bases:

>100_bases
TGGTAACGTATAAAGAGGTACTCCAATTCTTTTAGGATACTCTTTCAACATAAAATATGTTAAGAAGTATGATGAACGAA
AAATATAGGGAGAGAGGGTT

Downstream 100 bases:

>100_bases
GTTGTGTTGAAGTTGAATGCATGCAGAGATGTCGTTATTTGTCGGTAAGTCGATATCCTTTGTCGAAACGTCGATATATT
GAAAAAATCGTTGATATAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MKMKDNKEFIGYVGTYTKENSEGIYKFTLDTEAKKISNVTLAAKLDNPTYVTINRNNEYLYSVVKEGESGGVAAYSINSK
TGELIEENRQVVEGASPCHVSVDSGNHTVVTANYHKGTIESFEVNEDGTINPATSIMAHEGSGPNKERQEKPHAHYAGYT
PDEKYVVGVDLGIDKIITYEIKDSTLTEVNRLSVNPGSGPRHITFHPNGKYAYVMTELSSEVIVLTYNPAEGSFTELQYI
STVPEEFDENNQGSAIHISSDGRFVYAGNRGHNSIAVFSVDQNTGKLTFVAHTSTEGNWPRDFVLDPTEKFLVATNEKSH
NLVLFSRSESTGELTLLQSDVVVPEPVCVKFLNV

Sequences:

>Translated_354_residues
MKMKDNKEFIGYVGTYTKENSEGIYKFTLDTEAKKISNVTLAAKLDNPTYVTINRNNEYLYSVVKEGESGGVAAYSINSK
TGELIEENRQVVEGASPCHVSVDSGNHTVVTANYHKGTIESFEVNEDGTINPATSIMAHEGSGPNKERQEKPHAHYAGYT
PDEKYVVGVDLGIDKIITYEIKDSTLTEVNRLSVNPGSGPRHITFHPNGKYAYVMTELSSEVIVLTYNPAEGSFTELQYI
STVPEEFDENNQGSAIHISSDGRFVYAGNRGHNSIAVFSVDQNTGKLTFVAHTSTEGNWPRDFVLDPTEKFLVATNEKSH
NLVLFSRSESTGELTLLQSDVVVPEPVCVKFLNV
>Mature_354_residues
MKMKDNKEFIGYVGTYTKENSEGIYKFTLDTEAKKISNVTLAAKLDNPTYVTINRNNEYLYSVVKEGESGGVAAYSINSK
TGELIEENRQVVEGASPCHVSVDSGNHTVVTANYHKGTIESFEVNEDGTINPATSIMAHEGSGPNKERQEKPHAHYAGYT
PDEKYVVGVDLGIDKIITYEIKDSTLTEVNRLSVNPGSGPRHITFHPNGKYAYVMTELSSEVIVLTYNPAEGSFTELQYI
STVPEEFDENNQGSAIHISSDGRFVYAGNRGHNSIAVFSVDQNTGKLTFVAHTSTEGNWPRDFVLDPTEKFLVATNEKSH
NLVLFSRSESTGELTLLQSDVVVPEPVCVKFLNV

Specific function: Unknown

COG id: COG2706

COG function: function code G; 3-carboxymuconate cyclase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cycloisomerase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1786983, Length=324, Percent_Identity=29.6296296296296, Blast_Score=117, Evalue=8e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011048
- InterPro:   IPR019405
- InterPro:   IPR015943 [H]

Pfam domain/function: PF10282 DUF2394 [H]

EC number: NA

Molecular weight: Translated: 39008; Mature: 39008

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMKDNKEFIGYVGTYTKENSEGIYKFTLDTEAKKISNVTLAAKLDNPTYVTINRNNEYL
CCCCCCCEEEEEEEEEECCCCCCEEEEEECCCCHHHCCEEEEEEECCCEEEEEECCCCEE
YSVVKEGESGGVAAYSINSKTGELIEENRQVVEGASPCHVSVDSGNHTVVTANYHKGTIE
EEEEECCCCCCEEEEEECCCCHHHHHHCHHHHCCCCCCEEEECCCCEEEEEEECCCCCCE
SFEVNEDGTINPATSIMAHEGSGPNKERQEKPHAHYAGYTPDEKYVVGVDLGIDKIITYE
EEEECCCCCCCCHHEEEEECCCCCCHHHHCCCCCCCCCCCCCCCEEEEEECCCCEEEEEE
IKDSTLTEVNRLSVNPGSGPRHITFHPNGKYAYVMTELSSEVIVLTYNPAEGSFTELQYI
ECCCCCCEEEEEEECCCCCCCEEEECCCCCEEEEEEECCCCEEEEEECCCCCCEEEEEEE
STVPEEFDENNQGSAIHISSDGRFVYAGNRGHNSIAVFSVDQNTGKLTFVAHTSTEGNWP
HHCCHHHCCCCCCCEEEEECCCEEEEECCCCCCEEEEEEEECCCCEEEEEEEECCCCCCC
RDFVLDPTEKFLVATNEKSHNLVLFSRSESTGELTLLQSDVVVPEPVCVKFLNV
CCEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCCHHHHEEECC
>Mature Secondary Structure
MKMKDNKEFIGYVGTYTKENSEGIYKFTLDTEAKKISNVTLAAKLDNPTYVTINRNNEYL
CCCCCCCEEEEEEEEEECCCCCCEEEEEECCCCHHHCCEEEEEEECCCEEEEEECCCCEE
YSVVKEGESGGVAAYSINSKTGELIEENRQVVEGASPCHVSVDSGNHTVVTANYHKGTIE
EEEEECCCCCCEEEEEECCCCHHHHHHCHHHHCCCCCCEEEECCCCEEEEEEECCCCCCE
SFEVNEDGTINPATSIMAHEGSGPNKERQEKPHAHYAGYTPDEKYVVGVDLGIDKIITYE
EEEECCCCCCCCHHEEEEECCCCCCHHHHCCCCCCCCCCCCCCCEEEEEECCCCEEEEEE
IKDSTLTEVNRLSVNPGSGPRHITFHPNGKYAYVMTELSSEVIVLTYNPAEGSFTELQYI
ECCCCCCEEEEEEECCCCCCCEEEECCCCCEEEEEEECCCCEEEEEECCCCCCEEEEEEE
STVPEEFDENNQGSAIHISSDGRFVYAGNRGHNSIAVFSVDQNTGKLTFVAHTSTEGNWP
HHCCHHHCCCCCCCEEEEECCCEEEEECCCCCCEEEEEEEECCCCEEEEEEEECCCCCCC
RDFVLDPTEKFLVATNEKSHNLVLFSRSESTGELTLLQSDVVVPEPVCVKFLNV
CCEEECCCCEEEEEECCCCCEEEEEECCCCCCEEEEEECCCCCCCHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]