Click here to switch to the map view.

The map label for this gene is fdhD [H]

Identifier: 52141965

GI number: 52141965

Start: 3404125

End: 3404922

Strand: Reverse

Name: fdhD [H]

Synonym: BCZK3278

Alternate gene names: 52141965

Gene position: 3404922-3404125 (Counterclockwise)

Preceding gene: 52141966

Following gene: 52141964

Centisome position: 64.23

GC content: 34.84

Gene sequence:

>798_bases
GTGAAACCGATACAGGTAGAAAGAGAAATCTTTCGTTATGAACAAGGGGCGTTTAAACATATAGAGGACAGCATTGTAAC
AGAGTTTCCAGTCACGATTAAAATGAACGGACAGGAGTTTGTTACAATGGTTAGTACTCCAGAATATATAGAAGATATGG
TAATAGGCTTCTTAGCATCTGAAGGAATCATTCGGAAGTATGAAGATATTGATGACATATGGGTACAAGAGAAAGAAGGA
TTTGTACATGTCACGACGGCAAAAGTAAATCCGTATTACGAACAAATGCAAAATAAACGTTATATTACTTCATGTTGTGG
TATGAGTAGACAAGGATTTGTCTTTGCAAATGATGCACTAAGCGCAAAGACAATGAGTGGCGTCCATGTACAGGTTACTG
CAGAAGACTGTTTTCGATTAATGAAAGAAATGCAGCAATCTGCAGAGACATTTCATCATACAGGTGGCGTTCATAATGCG
TCTTTGTGCAATGTGAATGGTATTATTTTAAGTCGAATGGATATCGGTAGACATAATGCGTTAGATAAAATTTATGGTTA
TTGCTTAAAAAATAATATTTCTATAAGAGATAAAATCATTGTTTTTAGCGGTCGTATTTCTTCGGAAATATTATTGAAAG
TTGCAAAAATTGGTTGTGAAATTATACTGTCAAAATCAGCTCCAACTGAGTTGGCTTTACAGCTAGCTGAAGAATTAGGT
ATTACTACGATAGGGTTTATTCGGAATGAATCCTTAAATGTATATACGCACCCAGAGCGTGTTTTAAATATAAAATAA

Upstream 100 bases:

>100_bases
AAATTAGTGAATTTGTTTTCAGATATGAAAGTAGAAGAAGATATTGCAGTTTCGGTATTTGTTTTTGATAAAAATATAAC
GTGAGAGAAGGATACTGATC

Downstream 100 bases:

>100_bases
GTAAAAGAGAGGCAATAAATATGAAATCTGTCACATTAGACAAACTACAACGTCCGTTAAAGGATTTACGTATTTCAGTT
ACTGATCGCTGTAATTTTCG

Product: formate dehydrogenase accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 265; Mature: 265

Protein sequence:

>265_residues
MKPIQVEREIFRYEQGAFKHIEDSIVTEFPVTIKMNGQEFVTMVSTPEYIEDMVIGFLASEGIIRKYEDIDDIWVQEKEG
FVHVTTAKVNPYYEQMQNKRYITSCCGMSRQGFVFANDALSAKTMSGVHVQVTAEDCFRLMKEMQQSAETFHHTGGVHNA
SLCNVNGIILSRMDIGRHNALDKIYGYCLKNNISIRDKIIVFSGRISSEILLKVAKIGCEIILSKSAPTELALQLAEELG
ITTIGFIRNESLNVYTHPERVLNIK

Sequences:

>Translated_265_residues
MKPIQVEREIFRYEQGAFKHIEDSIVTEFPVTIKMNGQEFVTMVSTPEYIEDMVIGFLASEGIIRKYEDIDDIWVQEKEG
FVHVTTAKVNPYYEQMQNKRYITSCCGMSRQGFVFANDALSAKTMSGVHVQVTAEDCFRLMKEMQQSAETFHHTGGVHNA
SLCNVNGIILSRMDIGRHNALDKIYGYCLKNNISIRDKIIVFSGRISSEILLKVAKIGCEIILSKSAPTELALQLAEELG
ITTIGFIRNESLNVYTHPERVLNIK
>Mature_265_residues
MKPIQVEREIFRYEQGAFKHIEDSIVTEFPVTIKMNGQEFVTMVSTPEYIEDMVIGFLASEGIIRKYEDIDDIWVQEKEG
FVHVTTAKVNPYYEQMQNKRYITSCCGMSRQGFVFANDALSAKTMSGVHVQVTAEDCFRLMKEMQQSAETFHHTGGVHNA
SLCNVNGIILSRMDIGRHNALDKIYGYCLKNNISIRDKIIVFSGRISSEILLKVAKIGCEIILSKSAPTELALQLAEELG
ITTIGFIRNESLNVYTHPERVLNIK

Specific function: Necessary for formate dehydrogenase activity [H]

COG id: COG1526

COG function: function code C; Uncharacterized protein required for formate dehydrogenase activity

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fdhD family [H]

Homologues:

Organism=Escherichia coli, GI1790329, Length=269, Percent_Identity=28.6245353159851, Blast_Score=95, Evalue=5e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003786 [H]

Pfam domain/function: PF02634 FdhD-NarQ [H]

EC number: NA

Molecular weight: Translated: 30025; Mature: 30025

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPIQVEREIFRYEQGAFKHIEDSIVTEFPVTIKMNGQEFVTMVSTPEYIEDMVIGFLAS
CCCCHHHHHHHHHHCCHHHHHHHHHHEECCEEEEECCCEEEEEECCHHHHHHHHHHHHHC
EGIIRKYEDIDDIWVQEKEGFVHVTTAKVNPYYEQMQNKRYITSCCGMSRQGFVFANDAL
CCHHHHHCCHHHHHEECCCCEEEEEEEECCHHHHHHCCCHHHHHHCCCCCCCEEEECCCC
SAKTMSGVHVQVTAEDCFRLMKEMQQSAETFHHTGGVHNASLCNVNGIILSRMDIGRHNA
CCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCEEEEEECCCCHHH
LDKIYGYCLKNNISIRDKIIVFSGRISSEILLKVAKIGCEIILSKSAPTELALQLAEELG
HHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHCC
ITTIGFIRNESLNVYTHPERVLNIK
CEEEEEEECCCEEEEECCCEEEECC
>Mature Secondary Structure
MKPIQVEREIFRYEQGAFKHIEDSIVTEFPVTIKMNGQEFVTMVSTPEYIEDMVIGFLAS
CCCCHHHHHHHHHHCCHHHHHHHHHHEECCEEEEECCCEEEEEECCHHHHHHHHHHHHHC
EGIIRKYEDIDDIWVQEKEGFVHVTTAKVNPYYEQMQNKRYITSCCGMSRQGFVFANDAL
CCHHHHHCCHHHHHEECCCCEEEEEEEECCHHHHHHCCCHHHHHHCCCCCCCEEEECCCC
SAKTMSGVHVQVTAEDCFRLMKEMQQSAETFHHTGGVHNASLCNVNGIILSRMDIGRHNA
CCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCEEEEEECCCCHHH
LDKIYGYCLKNNISIRDKIIVFSGRISSEILLKVAKIGCEIILSKSAPTELALQLAEELG
HHHHHHHHHCCCCCEEEEEEEEECCCCHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHCC
ITTIGFIRNESLNVYTHPERVLNIK
CEEEEEEECCCEEEEECCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA