Click here to switch to the map view.

The map label for this gene is rsfA [H]

Identifier: 52141109

GI number: 52141109

Start: 4249125

End: 4249766

Strand: Direct

Name: rsfA [H]

Synonym: BCZK4143

Alternate gene names: 52141109

Gene position: 4249125-4249766 (Clockwise)

Preceding gene: 52141108

Following gene: 52141094

Centisome position: 80.16

GC content: 39.1

Gene sequence:

>642_bases
ATGAAAACACGTCAAGATGCATGGACAAAAGAAGACGATCTCCTTTTAGCCGAAACTGTTTTACGGCATATTCGCAGCGG
CAGCACACAAATAAAAGCATTCGATGAAGTCGGCGATGCTTTAAATCGGACTTCCGCAGCTTGCGGCTTTAGATGGAATG
CTGAAGTGAGACCGAACTACGAAGATGCGGTGCAACTTGCAAAAAAACAACGGAAAGAATTAAAGCGCTCTGAAGCTAAA
ATAGAAAAAGAGCAGTTCACGAAAACGAAACAACTCGTAATCGATGCTGAGTTTTCAGAAGATATTGCGCCAAGTAAACA
AGAACTTACAATGCAAAATGTCATCTCGTTTTTGCAAAACTTAGAGCATACCAACCCTTCACTCACAAAGTTACAAACTG
AAAATGATGTACTACAAGCTCAGCTCACTTCCTTGCAAAAAACGAATGATGAGCTTGAAACTAAATTAGCCGTACTCACA
AAAAAACAACAAGCAATCGAAGAAGATTATGCAATGCTCGTTAGAATTATGGACCGCGCTCGAAAACTTGTTTCAGTCGA
AGAACCAGAAGAGCAAATTGCTCCGATTTTCAAAACAGATCAAAATGGAAACTTAGATATTATATATTCTGCAGAGAATT
AA

Upstream 100 bases:

>100_bases
CAAGCACTTTCTACTGTATATGAAAAATTACAAAGTTCGAATAAAACAAAAAATAAAGGGTAACATAAGCGAAAACGTCA
CCATTATGGAGGCTTCGCTT

Downstream 100 bases:

>100_bases
AAATAGGGATGTCACTTTTTTTGATTAAGTGACATCCCTATTTTTTTCTGTGAATAATGTATTGGTAAATGAAATTATAT
CGACGATTCGACAAGGAATA

Product: prespore-specific transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MKTRQDAWTKEDDLLLAETVLRHIRSGSTQIKAFDEVGDALNRTSAACGFRWNAEVRPNYEDAVQLAKKQRKELKRSEAK
IEKEQFTKTKQLVIDAEFSEDIAPSKQELTMQNVISFLQNLEHTNPSLTKLQTENDVLQAQLTSLQKTNDELETKLAVLT
KKQQAIEEDYAMLVRIMDRARKLVSVEEPEEQIAPIFKTDQNGNLDIIYSAEN

Sequences:

>Translated_213_residues
MKTRQDAWTKEDDLLLAETVLRHIRSGSTQIKAFDEVGDALNRTSAACGFRWNAEVRPNYEDAVQLAKKQRKELKRSEAK
IEKEQFTKTKQLVIDAEFSEDIAPSKQELTMQNVISFLQNLEHTNPSLTKLQTENDVLQAQLTSLQKTNDELETKLAVLT
KKQQAIEEDYAMLVRIMDRARKLVSVEEPEEQIAPIFKTDQNGNLDIIYSAEN
>Mature_213_residues
MKTRQDAWTKEDDLLLAETVLRHIRSGSTQIKAFDEVGDALNRTSAACGFRWNAEVRPNYEDAVQLAKKQRKELKRSEAK
IEKEQFTKTKQLVIDAEFSEDIAPSKQELTMQNVISFLQNLEHTNPSLTKLQTENDVLQAQLTSLQKTNDELETKLAVLT
KKQQAIEEDYAMLVRIMDRARKLVSVEEPEEQIAPIFKTDQNGNLDIIYSAEN

Specific function: Seems to improve the efficiency of sporulation by fine- tuning the expression of genes in the sigma F regulon, particularly the timing of their expression. Negatively regulates spoIIR and its own synthesis [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Myb-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014243
- InterPro:   IPR017877 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24411; Mature: 24411

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS50090 MYB_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTRQDAWTKEDDLLLAETVLRHIRSGSTQIKAFDEVGDALNRTSAACGFRWNAEVRPNY
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCH
EDAVQLAKKQRKELKRSEAKIEKEQFTKTKQLVIDAEFSEDIAPSKQELTMQNVISFLQN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHH
LEHTNPSLTKLQTENDVLQAQLTSLQKTNDELETKLAVLTKKQQAIEEDYAMLVRIMDRA
HCCCCCCHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKLVSVEEPEEQIAPIFKTDQNGNLDIIYSAEN
HHHHCCCCCHHHHCCHHCCCCCCCEEEEEECCC
>Mature Secondary Structure
MKTRQDAWTKEDDLLLAETVLRHIRSGSTQIKAFDEVGDALNRTSAACGFRWNAEVRPNY
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCH
EDAVQLAKKQRKELKRSEAKIEKEQFTKTKQLVIDAEFSEDIAPSKQELTMQNVISFLQN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHH
LEHTNPSLTKLQTENDVLQAQLTSLQKTNDELETKLAVLTKKQQAIEEDYAMLVRIMDRA
HCCCCCCHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RKLVSVEEPEEQIAPIFKTDQNGNLDIIYSAEN
HHHHCCCCCHHHHCCHHCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377; 10629188 [H]