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The map label for this gene is yrvN [H]

Identifier: 52141108

GI number: 52141108

Start: 4247801

End: 4249087

Strand: Direct

Name: yrvN [H]

Synonym: BCZK4142

Alternate gene names: 52141108

Gene position: 4247801-4249087 (Clockwise)

Preceding gene: 52141113

Following gene: 52141109

Centisome position: 80.13

GC content: 39.16

Gene sequence:

>1287_bases
ATGAAACAACCACTCGCACATCGAATGCGCCCTACAAATATTCAAGAAATTATCGGACAACAACATTTAGTTGGCGAAGG
AAAAATTTTATGGCGAATGGTCCAAGCGAATCATTTTCAATCTATGATTTTATATGGCCCTCCAGGCACTGGAAAAACAT
CTATCGCGAGCGCAATTGCCGGAAGTACCGGAACCCCTTTTCGCCTATTAAACGCTGTTACTCATAATAAAAAAGATATG
GAAGTTGTCGTACAAGAGGCAAAGATGCATCGACACCTCGTTTTAATTTTAGATGAAGTACACCGTCTAGATAAAGCAAA
ACAGGATTTTTTATTACCCCATTTAGAAAGTGGACTCCTTACTTTAATTGGTGCAACGACGAGTAATCCGTTCCATGCTA
TTAATTCTGCTATTCGAAGTCGTTGCCAAATCTTTGAATTACACGCATTAACAGAAGATGATCTTTTAATTGGCTTAAAA
CGAGCACTTGAAGATAAAGAAAAAGGTCTTGGAGAATATGATGTAACTGTTACACCTGAGGCATTACATCACTTTGCAAA
TGCATCAGGCGGAGATATGCGTTCCGCTTATAATGCACTTGAACTAGCTGTTTTATCTAGCTTTACAACTGATGATAAAG
CTGCGGAAATTACGCTAGAAATCGCAGAAGAATGTTTACAAAAAAAGAGCTTCGTTCATGACAAGGGCGGGGATGCTCAT
TATGACGTATTATCGGCATTTCAAAAATCGGTGCGCGGAAGCGATGTAAATGCAGCACTTCATTATTTAGCACGTCTTAT
TGAAGCTGGTGATTTACAAAGCATCAGTAGACGTCTTCTTATTATGGCATATGAGGATATTGGACTTGCTAGCCCGCAAG
CTGGACCGCGTACGCTAGCAGCTATAGAATCAGCGGAACGAGTTGGATTCCCAGAAGCACGCATACCACTTGCAAATGCT
GTTATCGAGCTTTGCTTATCACCCAAATCGAACTCAGCTTATAAAGCACTTGATGCTGCATTACACGATTTACGTAACGG
TCAAACAGGAGACATTCCAAGTCATTTAAAAGATAGTCATTATAAAGGCGCAGAGGCACTTGGAAGAGGCATTGGATACT
TATACCCACACGACCAACCAAATGGCTGGGTACAACAACAATACTTACCTGATAAAATAAAAAACAAACAATATTATAAA
CCAAAAACGACAGGAAAATTTGAGCAAGCACTTTCTACTGTATATGAAAAATTACAAAGTTCGAATAAAACAAAAAATAA
AGGGTAA

Upstream 100 bases:

>100_bases
ATTCATATTCATTTTTCCCACAAAACAGCATCCTATTTCAAATTCCACTAAAAAAAATGATACGATAGAAAGATATTATA
CATTAAGGGAGACGGTAAAA

Downstream 100 bases:

>100_bases
CATAAGCGAAAACGTCACCATTATGGAGGCTTCGCTTATGAAAACACGTCAAGATGCATGGACAAAAGAAGACGATCTCC
TTTTAGCCGAAACTGTTTTA

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANHFQSMILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDM
EVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLLTLIGATTSNPFHAINSAIRSRCQIFELHALTEDDLLIGLK
RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECLQKKSFVHDKGGDAH
YDVLSAFQKSVRGSDVNAALHYLARLIEAGDLQSISRRLLIMAYEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANA
VIELCLSPKSNSAYKALDAALHDLRNGQTGDIPSHLKDSHYKGAEALGRGIGYLYPHDQPNGWVQQQYLPDKIKNKQYYK
PKTTGKFEQALSTVYEKLQSSNKTKNKG

Sequences:

>Translated_428_residues
MKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANHFQSMILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDM
EVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLLTLIGATTSNPFHAINSAIRSRCQIFELHALTEDDLLIGLK
RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECLQKKSFVHDKGGDAH
YDVLSAFQKSVRGSDVNAALHYLARLIEAGDLQSISRRLLIMAYEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANA
VIELCLSPKSNSAYKALDAALHDLRNGQTGDIPSHLKDSHYKGAEALGRGIGYLYPHDQPNGWVQQQYLPDKIKNKQYYK
PKTTGKFEQALSTVYEKLQSSNKTKNKG
>Mature_428_residues
MKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANHFQSMILYGPPGTGKTSIASAIAGSTGTPFRLLNAVTHNKKDM
EVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLLTLIGATTSNPFHAINSAIRSRCQIFELHALTEDDLLIGLK
RALEDKEKGLGEYDVTVTPEALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECLQKKSFVHDKGGDAH
YDVLSAFQKSVRGSDVNAALHYLARLIEAGDLQSISRRLLIMAYEDIGLASPQAGPRTLAAIESAERVGFPEARIPLANA
VIELCLSPKSNSAYKALDAALHDLRNGQTGDIPSHLKDSHYKGAEALGRGIGYLYPHDQPNGWVQQQYLPDKIKNKQYYK
PKTTGKFEQALSTVYEKLQSSNKTKNKG

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AAA ATPase family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=440, Percent_Identity=34.0909090909091, Blast_Score=247, Evalue=2e-65,
Organism=Homo sapiens, GI18426904, Length=440, Percent_Identity=30.6818181818182, Blast_Score=202, Evalue=5e-52,
Organism=Homo sapiens, GI31563534, Length=218, Percent_Identity=27.9816513761468, Blast_Score=70, Evalue=4e-12,
Organism=Escherichia coli, GI1787119, Length=428, Percent_Identity=39.4859813084112, Blast_Score=300, Evalue=8e-83,
Organism=Saccharomyces cerevisiae, GI6324111, Length=425, Percent_Identity=34.1176470588235, Blast_Score=240, Evalue=4e-64,
Organism=Saccharomyces cerevisiae, GI6324039, Length=317, Percent_Identity=23.9747634069401, Blast_Score=69, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR008824
- InterPro:   IPR021886 [H]

Pfam domain/function: PF12002 MgsA_C; PF05496 RuvB_N [H]

EC number: NA

Molecular weight: Translated: 47168; Mature: 47168

Theoretical pI: Translated: 7.85; Mature: 7.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANHFQSMILYGPPGTGKTSIASAIA
CCCCHHHCCCCCCHHHHHCCHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHC
GSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCE
TLIGATTSNPFHAINSAIRSRCQIFELHALTEDDLLIGLKRALEDKEKGLGEYDVTVTPE
EEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHH
ALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECLQKKSFVHDKGGDAH
HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
YDVLSAFQKSVRGSDVNAALHYLARLIEAGDLQSISRRLLIMAYEDIGLASPQAGPRTLA
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHEEEEEECCCCCCCCCCCCHHHH
AIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHDLRNGQTGDIPSHLKDSH
HHHHHHHCCCCHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHCCC
YKGAEALGRGIGYLYPHDQPNGWVQQQYLPDKIKNKQYYKPKTTGKFEQALSTVYEKLQS
CCCHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
SNKTKNKG
CCCCCCCC
>Mature Secondary Structure
MKQPLAHRMRPTNIQEIIGQQHLVGEGKILWRMVQANHFQSMILYGPPGTGKTSIASAIA
CCCCHHHCCCCCCHHHHHCCHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHC
GSTGTPFRLLNAVTHNKKDMEVVVQEAKMHRHLVLILDEVHRLDKAKQDFLLPHLESGLL
CCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCE
TLIGATTSNPFHAINSAIRSRCQIFELHALTEDDLLIGLKRALEDKEKGLGEYDVTVTPE
EEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEECHH
ALHHFANASGGDMRSAYNALELAVLSSFTTDDKAAEITLEIAEECLQKKSFVHDKGGDAH
HHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHH
YDVLSAFQKSVRGSDVNAALHYLARLIEAGDLQSISRRLLIMAYEDIGLASPQAGPRTLA
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHEEEEEECCCCCCCCCCCCHHHH
AIESAERVGFPEARIPLANAVIELCLSPKSNSAYKALDAALHDLRNGQTGDIPSHLKDSH
HHHHHHHCCCCHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHCCC
YKGAEALGRGIGYLYPHDQPNGWVQQQYLPDKIKNKQYYKPKTTGKFEQALSTVYEKLQS
CCCHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
SNKTKNKG
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]