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The map label for this gene is ytjP [H]

Identifier: 52140799

GI number: 52140799

Start: 4555217

End: 4556623

Strand: Reverse

Name: ytjP [H]

Synonym: BCZK4454

Alternate gene names: 52140799

Gene position: 4556623-4555217 (Counterclockwise)

Preceding gene: 52140796

Following gene: 52140798

Centisome position: 85.96

GC content: 38.38

Gene sequence:

>1407_bases
ATGTCAGCAATTAATTGGACAGAAGAAGTTGCAAAACGAAAAGATGATTTAATTCGTGATACACAACAATTTTTACAAAT
TAAAAGTGTATGGGAAGAAGAGTCGGCAAAAGAGGGTGCACCGTTCGGTGAAGGTGTAGAAAAAGCTCTATCTTTCATGT
TACATAAAGGAGAAACGGAAGGTTTTACTTCTAAAAATTTAGAAGGATATGCAGGTCATCTTGAAATGGGACAAGGAGAA
GAATTAGTAGGTATTCTTTGTCACGTTGACGTTGTACCAGAAGGAGATGGTTGGACGACTCCTGCATATAGTGCAGATAT
TCGCGATGGAAAGATTTTTGCACGTGGTGCAATTGACGATAAAGGCCCAACGATGGCAGCTTATTATGCGATGAAAATTG
TGAAAGAATTAGGTTTACCTCTTTCAAAACGCGTTCGTATGATTTTAGGAACAGATGAGGAAAGCAATTGGAAATGTGTA
GATCACTACTTTAAAAACGAAGAAATGCCAACAATCGGTTTTGCGCCAGACGCGGACTTTCCAATTATTAATGCAGAAAA
AGGAATTTCTGATATACAAGTTGTGCAAAATGGTAGTGAAGAGAAGCAAGGTACATATGAACTTGTTTCATTTGAGTCAG
GTCGCCGTTTAAATATGGTTCCTGATTTTGCAGAAGCGGTTGTTACAGGAGAAGATGTAAATGCACTTACAGTAGCATAT
GAAGAGTATTTACAAACTGCTAAAAAAATAGGTGAAGCAATTGTAGAAGGTAATACGGTGACATTGCAAATTAAAGGGAT
TTCAGCTCACGGATCTACTCCTGAAAAAGGAGAAAATGCAGGTTTATTACTGGCAAACTTCTTAACTACAGTTGCTCTTG
ATGGGAAAGCAAAGGCATTTGCAACGTTTGCAACAGAAACATTTACTGGTGATATTTTTGGAGAAAAGGCTACGATTGCT
TATAAAGATGAAGTTAGCGGTCCGTTGACAGTGAATGTTGGTCGCCTTTCTTATACGAAAGAGAATGGTGGCAATTTCGG
ATTAAACGTACGTTATCCCGTTACGACTAACTTTGAAGAAATGATTGCAAAGTTAAAAGAATATGTAGGTACTCATGGAT
TTGCAGTAGCGGATTATTCGAACTCTCGCCCGCACCACGTTGATAAAGATCACGTATTAATTCGTACGTTGCAGCGTGTA
TACGAAGAGCAAACAGGTGAAAAAGCAGAACTATTAGCAATCGGCGGCGGTACTTACGCTCGTTCATTAAAAGCTGGTGT
TGCATTTGGCCCATTGTTCCCTGGAAAAGAAGAACTTGCACATCAAAAAGACGAGTATATTGAAATTGAAGACTTATTAA
AAGCAACAGCAATTTATGCGCAAGCAATTCATGAATTAGCGAAATAA

Upstream 100 bases:

>100_bases
TGAAATATTACAATTGTTCGGTATTTGGTTTTCGTGTATGGCATAAGAGATTTCGGTTTGTTATGATGAAAGAAACAATA
TAGTGAAGGATGGATGCGTG

Downstream 100 bases:

>100_bases
TGGATATATAAATAATGACCGCTCTCTATTTTGGAGGGCGGCTTCTTTTTACCTGAATGAGATAAGAAAGAAAAGCAACA
ATAGAAAGAAGGAGAAGATG

Product: dipeptidase PepV

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MSAINWTEEVAKRKDDLIRDTQQFLQIKSVWEEESAKEGAPFGEGVEKALSFMLHKGETEGFTSKNLEGYAGHLEMGQGE
ELVGILCHVDVVPEGDGWTTPAYSADIRDGKIFARGAIDDKGPTMAAYYAMKIVKELGLPLSKRVRMILGTDEESNWKCV
DHYFKNEEMPTIGFAPDADFPIINAEKGISDIQVVQNGSEEKQGTYELVSFESGRRLNMVPDFAEAVVTGEDVNALTVAY
EEYLQTAKKIGEAIVEGNTVTLQIKGISAHGSTPEKGENAGLLLANFLTTVALDGKAKAFATFATETFTGDIFGEKATIA
YKDEVSGPLTVNVGRLSYTKENGGNFGLNVRYPVTTNFEEMIAKLKEYVGTHGFAVADYSNSRPHHVDKDHVLIRTLQRV
YEEQTGEKAELLAIGGGTYARSLKAGVAFGPLFPGKEELAHQKDEYIEIEDLLKATAIYAQAIHELAK

Sequences:

>Translated_468_residues
MSAINWTEEVAKRKDDLIRDTQQFLQIKSVWEEESAKEGAPFGEGVEKALSFMLHKGETEGFTSKNLEGYAGHLEMGQGE
ELVGILCHVDVVPEGDGWTTPAYSADIRDGKIFARGAIDDKGPTMAAYYAMKIVKELGLPLSKRVRMILGTDEESNWKCV
DHYFKNEEMPTIGFAPDADFPIINAEKGISDIQVVQNGSEEKQGTYELVSFESGRRLNMVPDFAEAVVTGEDVNALTVAY
EEYLQTAKKIGEAIVEGNTVTLQIKGISAHGSTPEKGENAGLLLANFLTTVALDGKAKAFATFATETFTGDIFGEKATIA
YKDEVSGPLTVNVGRLSYTKENGGNFGLNVRYPVTTNFEEMIAKLKEYVGTHGFAVADYSNSRPHHVDKDHVLIRTLQRV
YEEQTGEKAELLAIGGGTYARSLKAGVAFGPLFPGKEELAHQKDEYIEIEDLLKATAIYAQAIHELAK
>Mature_467_residues
SAINWTEEVAKRKDDLIRDTQQFLQIKSVWEEESAKEGAPFGEGVEKALSFMLHKGETEGFTSKNLEGYAGHLEMGQGEE
LVGILCHVDVVPEGDGWTTPAYSADIRDGKIFARGAIDDKGPTMAAYYAMKIVKELGLPLSKRVRMILGTDEESNWKCVD
HYFKNEEMPTIGFAPDADFPIINAEKGISDIQVVQNGSEEKQGTYELVSFESGRRLNMVPDFAEAVVTGEDVNALTVAYE
EYLQTAKKIGEAIVEGNTVTLQIKGISAHGSTPEKGENAGLLLANFLTTVALDGKAKAFATFATETFTGDIFGEKATIAY
KDEVSGPLTVNVGRLSYTKENGGNFGLNVRYPVTTNFEEMIAKLKEYVGTHGFAVADYSNSRPHHVDKDHVLIRTLQRVY
EEQTGEKAELLAIGGGTYARSLKAGVAFGPLFPGKEELAHQKDEYIEIEDLLKATAIYAQAIHELAK

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; fifth step. [C]

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001261
- InterPro:   IPR010964
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF01546 Peptidase_M20 [H]

EC number: 3.4.13.3

Molecular weight: Translated: 51286; Mature: 51155

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: PS00759 ARGE_DAPE_CPG2_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAINWTEEVAKRKDDLIRDTQQFLQIKSVWEEESAKEGAPFGEGVEKALSFMLHKGETE
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC
GFTSKNLEGYAGHLEMGQGEELVGILCHVDVVPEGDGWTTPAYSADIRDGKIFARGAIDD
CCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCC
KGPTMAAYYAMKIVKELGLPLSKRVRMILGTDEESNWKCVDHYFKNEEMPTIGFAPDADF
CCCHHHHHHHHHHHHHHCCCHHHCEEEEEECCCCCCCHHHHHHHCCCCCCEEECCCCCCC
PIINAEKGISDIQVVQNGSEEKQGTYELVSFESGRRLNMVPDFAEAVVTGEDVNALTVAY
CEEECCCCCCHHHHHHCCCCCCCCCEEEEEECCCCEECCCCHHHHHHCCCCCCCHHHHHH
EEYLQTAKKIGEAIVEGNTVTLQIKGISAHGSTPEKGENAGLLLANFLTTVALDGKAKAF
HHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEE
ATFATETFTGDIFGEKATIAYKDEVSGPLTVNVGRLSYTKENGGNFGLNVRYPVTTNFEE
EEEHHHHEECCCCCCCEEEEECCCCCCCEEEEECEEEEEECCCCEEEEEEEECCCCCHHH
MIAKLKEYVGTHGFAVADYSNSRPHHVDKDHVLIRTLQRVYEEQTGEKAELLAIGGGTYA
HHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
RSLKAGVAFGPLFPGKEELAHQKDEYIEIEDLLKATAIYAQAIHELAK
HHHHCCCEECCCCCCHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure 
SAINWTEEVAKRKDDLIRDTQQFLQIKSVWEEESAKEGAPFGEGVEKALSFMLHKGETE
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCC
GFTSKNLEGYAGHLEMGQGEELVGILCHVDVVPEGDGWTTPAYSADIRDGKIFARGAIDD
CCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCC
KGPTMAAYYAMKIVKELGLPLSKRVRMILGTDEESNWKCVDHYFKNEEMPTIGFAPDADF
CCCHHHHHHHHHHHHHHCCCHHHCEEEEEECCCCCCCHHHHHHHCCCCCCEEECCCCCCC
PIINAEKGISDIQVVQNGSEEKQGTYELVSFESGRRLNMVPDFAEAVVTGEDVNALTVAY
CEEECCCCCCHHHHHHCCCCCCCCCEEEEEECCCCEECCCCHHHHHHCCCCCCCHHHHHH
EEYLQTAKKIGEAIVEGNTVTLQIKGISAHGSTPEKGENAGLLLANFLTTVALDGKAKAF
HHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCEE
ATFATETFTGDIFGEKATIAYKDEVSGPLTVNVGRLSYTKENGGNFGLNVRYPVTTNFEE
EEEHHHHEECCCCCCCEEEEECCCCCCCEEEEECEEEEEECCCCEEEEEEEECCCCCHHH
MIAKLKEYVGTHGFAVADYSNSRPHHVDKDHVLIRTLQRVYEEQTGEKAELLAIGGGTYA
HHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHH
RSLKAGVAFGPLFPGKEELAHQKDEYIEIEDLLKATAIYAQAIHELAK
HHHHCCCEECCCCCCHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]